[gmx-users] How to build a lipid bilayer in GROMACS?

[Jack Shultz]

I don't know if this helps you, but there is a membrane plugin for VMD
which you can download for free. I've used this to insert proteins in
membranes and then use namd to run MD. I don't know what steps are
involved to make this structure compatible with GROMACS.

http://www.ks.uiuc.edu/Research/vmd/plugins/membrane/


On Sat, May 2, 2009 at 7:46 AM, Anirban Ghosh <anirbanz83 at yahoo.co.in> wrote:
> Hi ALL,
>
>
>
> I have a protein pdb file. I want to put this protein molecule in a lipid
> bilayer using GROMACS. I shall be glad if anyone can kindly tell me how to
> build a lipid bilayer in GROMACS and how to embed the protein in it to get
> the final pdb of the entire system. Thanks a lot.
>
>
>
> Regards,
>
>
>
>
>
> Anirban Ghosh
>
> Grade Based Engineer
>
> Bioinformatics Team
>
> Scientific & Engineering Computing Group
>
> Centre for Development of Advanced Computing
>
> Pune, India
>
>
>
> Anirban Ghosh
> Grade Based Engineer
> Bioinformatics Team
> Centre for Development of Advanced Computing (C-DAC)
> Pune, India
>
>
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-- 
Jack

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