May 2009 Archives by subject

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Starting: Fri May 1 02:04:04 CEST 2009
Ending: Sun May 31 21:51:49 CEST 2009
Messages: 731

[gmx-users] (no subject) Antonia V.
[gmx-users] (no subject) Mark Abraham
[gmx-users] (no subject) Antonia V.
[gmx-users] (no subject) Mark Abraham
[gmx-users] (no subject) Antonia V.
[gmx-users] (no subject) Mark Abraham
[gmx-users] (no subject) chandrabhan seniya
[gmx-users] (no subject) Mark Abraham
[gmx-users] -np switch Payman Pirzadeh
[gmx-users] -np switch Mark Abraham
[gmx-users] -np switch Justin A. Lemkul
[gmx-users] .trr forces into VMD Matteus Lindgren
[gmx-users] .trr forces into VMD Mark Abraham
[gmx-users] .trr forces into VMD Berk Hess
[gmx-users] ? particles communicated to PME node... Pavel Semenyuk
[gmx-users] ? particles communicated to PME node... Mark Abraham
[gmx-users] ? particles communicated to PME node... Pavel Semenyuk
[gmx-users] ? particles communicated to PME node... Justin A. Lemkul
[gmx-users] about coorelation fluctuation calculation mircial at sjtu.edu.cn
[gmx-users] Ac-CoA topology problem Thamu
[gmx-users] Ac-CoA topology problem Justin A. Lemkul
[gmx-users] adding non-polar hydrogens Stefano Meliga
[gmx-users] adding non-polar hydrogens Justin A. Lemkul
[gmx-users] adding non-polar hydrogens - incompatibility of pdb2gmx and grompp Mark Abraham
[gmx-users] adding non-polar hydrogens - incompatibility of pdb2gmx and grompp Stefano Meliga
[gmx-users] adding non-polar hydrogens - incompatibility of pdb2gmx and grompp Justin A. Lemkul
[gmx-users] amber to gromos topology baloilgiullare at interfree.it
[gmx-users] amber to gromos topology Justin A. Lemkul
[gmx-users] angular COM removal XAvier Periole
[gmx-users] angular COM removal David van der Spoel
[gmx-users] angular COM removal David van der Spoel
[gmx-users] angular COM removal XAvier Periole
[gmx-users] angular COM removal XAvier Periole
[gmx-users] angular COM removal XAvier Periole
[gmx-users] Are Gromos 45a3 and GROMOS 53a6 compatible? Chih-Ying Lin
[gmx-users] Are Gromos 45a3 and GROMOS 53a6 compatible? Mark Abraham
[gmx-users] Are Gromos 45a3 and GROMOS 53a6 compatible? XAvier Periole
[gmx-users] Are Gromos 45a3 and GROMOS 53a6 compatible? Chih-Ying Lin
[gmx-users] Are Gromos 45a3 and GROMOS 53a6 compatible? Tsjerk Wassenaar
[gmx-users] Atom -C not found in residue MET1 while adding hydrogens Justin A. Lemkul
[gmx-users] Atom -C not found in residue MET1 while adding hydrogens Anirban Ghosh
[gmx-users] atom name O3PB not found in residue ATP 340 while generating exclusions when running pdb2gmx TJ Piggot
[gmx-users] atom name O3PB not found in residue ATP 340 while generating exclusions when running pdb2gmx Justin A. Lemkul
[gmx-users] atom name O3PB not found in residue ATP 340 while generating exclusions when running pdb2gmx Una Bjarnadottir
[gmx-users] atomic stress distribution map farzaneh fatahi
[gmx-users] autocorrelation functions from several simulations d giordano mancini
[gmx-users] bond, angle and dihedral restraints in Gromacs Rebeca García Fandiño
[gmx-users] bond, angle and dihedral restraints in Gromacs Justin A. Lemkul
[gmx-users] bond, angle and dihedral restraints in Gromacs Rebeca García Fandiño
[gmx-users] bond, angle and dihedral restraints in Gromacs Justin A. Lemkul
[gmx-users] bond, angle and dihedral restraints in Gromacs Mark Abraham
[gmx-users] buckingham and LJ Matthew Watkins
[gmx-users] Can we abstract any frame from the trajectory file(trr) and save it as a gro file? Justin A. Lemkul
[gmx-users] Can we abstract any frame from the trajectory file(trr) and save it as a gro file? Cheong Wee Loong, Daniel
[gmx-users] Can we abstract any frame from the trajectory file(trr) and save it as a gro file? wuxiao
[gmx-users] CG to Atomistic Edson Fauth Vargas Filho
[gmx-users] CG to Atomistic Edson Fauth Vargas Filho
[gmx-users] changelog for gmx 4.0.5? Alan
[gmx-users] changelog for gmx 4.0.5? David van der Spoel
[gmx-users] charge distribution Cheong Wee Loong, Daniel
[gmx-users] Coarse graining for Benzene and related molecules Xavier Periole
[gmx-users] Condensation analysis Jacob Spooner
[gmx-users] configuration does not change in minimization trajectory Justin A. Lemkul
[gmx-users] configuration does not change in minimization trajectory Justin A. Lemkul
[gmx-users] configuration does not change in minimization trajectory heiko252 at web.de
Re: [gmx-users] configuration does not change in minimization trajectory heiko252 at web.de
Re: [gmx-users] configuration does not change in minimization trajectory heiko252 at web.de
[gmx-users] Conjugate Gradient - Equations Tsjerk Wassenaar
[gmx-users] constant term in dihedral potential function Kukol, Andreas
[gmx-users] constant term in dihedral potential function Berk Hess
[gmx-users] constant term in dihedral potential function Mark Abraham
[gmx-users] constant term in dihedral potential function Kukol, Andreas
[gmx-users] constant term in dihedral potential function Mark Abraham
[gmx-users] constant term in dihedral potential function Berk Hess
[gmx-users] constant term in dihedral potential function Kukol, Andreas
[gmx-users] constant term in dihedral potential function Mark Abraham
[gmx-users] constant term in dihedral potential function Berk Hess
[gmx-users] constant term in dihedral potential function Mark Abraham
[gmx-users] Constraints specified in .mdp as well as in .top files Vishwanath Dalvi
[gmx-users] Constraints specified in .mdp as well as in .top files Mark Abraham
[gmx-users] Constraints specified in .mdp as well as in .top files Vishwanath Dalvi
[gmx-users] Constraints specified in .mdp as well as in .top files Mark Abraham
[gmx-users] Constraints specified in .mdp as well as in .top files Berk Hess
[gmx-users] Coordinate covalent bond Zhanglin Ni
[gmx-users] Coordinate covalent bond Mark Abraham
[gmx-users] Coulomb energies for a charge seperated species Ali Hassanali
[gmx-users] Counter ions added Chih-Ying Lin
[gmx-users] Counter ions added Mark Abraham
[gmx-users] diff behaviour from same .tpr file under v3.3 /3.3.2 Paul Rowntree
[gmx-users] diff behaviour from same .tpr file under v3.3 /3.3.2 Mark Abraham
[gmx-users] Dihedral definition ANINDITA GAYEN
[gmx-users] Dihedral definition David van der Spoel
[gmx-users] DNA-ligand interactions with AMBER Paulo Netz
[gmx-users] DNA-ligand interactions with AMBER Mark Abraham
[gmx-users] Re: DNA-ligand interactions with AMBER Alan
[gmx-users] Re: DNA-ligand interactions with AMBER Paulo Netz
[gmx-users] DNA-ligand simulation with AMBER FF Paulo Netz
[gmx-users] dt > = 0.002 Chih-Ying Lin
[gmx-users] dt > = 0.002 Justin A. Lemkul
[gmx-users] dt > = 0.002 Joshua Adelman
[gmx-users] Dynamics with DNA tanos at ime.eb.br
[gmx-users] Dynamics with DNA Mark Abraham
[gmx-users] Dynamics with DNA Justin A. Lemkul
[gmx-users] Dynamics with DNA Tsjerk Wassenaar
[gmx-users] Re: Dynamics with DNA Alan
[gmx-users] Energy minimization error by GMX 4.0.4 Yanmei Song
[gmx-users] Re: Energy minimization error by GMX 4.0.4 Yanmei Song
[gmx-users] Energy minimization error by GMX 4.0.4 Justin A. Lemkul
[gmx-users] Energy minimization error by GMX 4.0.4 Justin A. Lemkul
[gmx-users] Energy minimization error by GMX 4.0.4 Mark Abraham
[gmx-users] Energy minimization error by GMX 4.0.4 Yanmei Song
[gmx-users] energy xvg file shows a large energy change from time step 0 to time step 0.2 ps Justin A. Lemkul
[gmx-users] energy xvg file shows a large energy change from time step 0 to time step 0.2 ps Pawan Kumar
[gmx-users] Error by pdb2gmx Justin A. Lemkul
[gmx-users] Error by pdb2gmx Yanmei Song
[gmx-users] Error by pdb2gmx Yanmei Song
[gmx-users] Error by pdb2gmx Justin A. Lemkul
[gmx-users] Re: Error by pdb2gmx wuxiao
[gmx-users] Error by pdb2gmx Mark Abraham
[gmx-users] Error by pdb2gmx Yanmei Song
[gmx-users] Error by pdb2gmx Mark Abraham
[gmx-users] error during solvation of system nitu sharma
[gmx-users] error during solvation of system Mark Abraham
[gmx-users] Error for 1-4 interaction Anirban Ghosh
[gmx-users] Error for 1-4 interaction Justin A. Lemkul
[gmx-users] essential dynamics analysis jayant james
[gmx-users] essential dynamics analysis Tsjerk Wassenaar
[gmx-users] Extend water layer along negative Z-direction Anirban Ghosh
[gmx-users] Extend water layer along negative Z-direction Justin A. Lemkul
[gmx-users] Extend water layer along negative Z-direction chris.neale at utoronto.ca
[gmx-users] Extend water layer along negative Z-direction chris.neale at utoronto.ca
[gmx-users] Extend water layer along negative Z-direction Tsjerk Wassenaar
[gmx-users] extending simulations Anna Marabotti
[gmx-users] extending simulations Justin A. Lemkul
[gmx-users] extending simulations zhang
[gmx-users] extending simulations kyungchan chae
[gmx-users] extending simulations vidhya sankar
[gmx-users] extending simulations Justin A. Lemkul
[gmx-users] extending simulations Alexander Itkin
[gmx-users] Failing installation with --enable-mpi option Bhanu
[gmx-users] Failing installation with --enable-mpi option Justin A. Lemkul
[gmx-users] Failing installation with --enable-mpi option Bhanu
[gmx-users] Failing installation with --enable-mpi option Bhanu
[gmx-users] Failing installation with --enable-mpi option Mark Abraham
[gmx-users] find with which mpi library /environment gromacs was compiled Mark Abraham
[gmx-users] find with which mpi library /environment gromacs was compiled Claus Valka
[gmx-users] force field parameter for ligands Zhanglin Ni
[gmx-users] Re: force field parameter for ligands Dechang Li
[gmx-users] force field parameter for ligands Mark Abraham
[gmx-users] Force groups? Chze Ling Wee
[gmx-users] Force groups? Berk Hess
[gmx-users] Force groups? Chze Ling Wee
[gmx-users] FudgeQQ parameter with TraPPE FF and OPLS-AA Rasmus "Termo" Lundsgaard
FW: [gmx-users] (no subject) Antonia V.
[gmx-users] g_angle - Order of Legendre polynomial for ACF - BUG ? Dennis Glass
[gmx-users] g_angle - Order of Legendre polynomial for ACF - BUG ? David van der Spoel
[gmx-users] g_angle - Order of Legendre polynomial for ACF - BUG ? XAvier Periole
[gmx-users] g_angle - Order of Legendre polynomial for ACF - BUG ? David van der Spoel
[gmx-users] g_cluster matrix input Luisa Pugliese
[gmx-users] g_clustsize method Jacob Spooner
[gmx-users] g_clustsize method David van der Spoel
[gmx-users] g_clustsize method Jacob Spooner
[gmx-users] g_clustsize method David van der Spoel
[gmx-users] g_rdf -xy Hongyan Xiao
[gmx-users] g_rdf -xy Berk Hess
[gmx-users] g_rdf -xy Hongyan Xiao
[gmx-users] g_wham output Schor, M.
[gmx-users] Re: gmx-users Digest, Vol 61, Issue 22 Jacek Czub
[gmx-users] Re: gmx-users Digest, Vol 61, Issue 29 Jacek Czub
[gmx-users] Re: gmx-users Digest, Vol 61, Issue 31 Alan
[gmx-users] gmx4.0.3: simulations do not run on 16 processors but do run on 10 Mark Abraham
[gmx-users] gmx4.0.3: simulations do not run on 16 processors but do run on 10 Ángel Piñeiro
[gmx-users] gmxtest Simba Xiao
[gmx-users] gmxtest Mark Abraham
[gmx-users] gmxtest Mark Abraham
[gmx-users] gmxtest Simba Xiao
[gmx-users] gromacs benchmark SGI ALTIX ICE with Intel Quad-Core E5472 intra\sa175950
[gmx-users] gromacs benchmark SGI ALTIX ICE with Intel Quad-Core E5472 Justin A. Lemkul
[gmx-users] gromacs benchmark SGI ALTIX ICE with Intel Quad-Core E5472 David van der Spoel
[gmx-users] gromacs on glacier.westgrid.ca Payman Pirzadeh
[gmx-users] gromacs on glacier.westgrid.ca Tsjerk Wassenaar
[gmx-users] gromacs on glacier.westgrid.ca Payman Pirzadeh
[gmx-users] gromacs on glacier.westgrid.ca Justin A. Lemkul
[gmx-users] gromacs on glacier.westgrid.ca Payman Pirzadeh
[gmx-users] gromacs on glacier.westgrid.ca Justin A. Lemkul
[gmx-users] gromacs on glacier.westgrid.ca Nicolas Sapay
[gmx-users] gromacs on glacier.westgrid.ca J. Rui Rodrigues
[gmx-users] gromacs on glacier.westgrid.ca Payman Pirzadeh
[gmx-users] GROMACS on glacier.westgrid.ca Paymon Pirzadeh
[gmx-users] GROMACS on glacier.westgrid.ca David van der Spoel
[gmx-users] GROMACS on glacier.westgrid.ca p.yamin at fz-juelich.de
[gmx-users] GROMACS on glacier.westgrid.ca Paymon Pirzadeh
[gmx-users] GROMACS on glacier.westgrid.ca Chris Neale
[gmx-users] GROMACS on glacier.westgrid.ca Mark Abraham
[gmx-users] grompp 4.0.5 hangs while 3.2.1 works Kaihsu Tai
[gmx-users] grompp 4.0.5 hangs while 3.2.1 works David van der Spoel
[gmx-users] grompp 4.0.5 hangs while 3.2.1 works Berk Hess
[gmx-users] Re: grompp 4.0.5 hangs while 3.2.1 works Kaihsu Tai
[gmx-users] grompp in gromacs-4.0.4 S. Vaitheeswaran
[gmx-users] grompp in gromacs-4.0.4 Justin A. Lemkul
[gmx-users] grompp in gromacs-4.0.4 S. Vaitheeswaran
[gmx-users] grompp warning sarbani chattopadhyay
[gmx-users] grompp warning Mark Abraham
[gmx-users] hardware recommendation Bernhard Knapp
[gmx-users] Has anyone adapted an Allinger force field for GROMACS? (MM,MM+,MM2,MM3...) David van der Spoel
[gmx-users] Has anyone adapted an Allinger force field for GROMACS? (MM,MM+,MM2,MM3...) Inon Sharony
[gmx-users] Hello: Forcefield and potentials for DNA-zinc finger complex Nehme El Hachem
[gmx-users] Hello: Forcefield and potentials for DNA-zinc finger complex Justin A. Lemkul
[gmx-users] Hello: Forcefield and potentials for DNA-zinc finger complex Tsjerk Wassenaar
[gmx-users] Help with nitrile group in complx protein-ligand md Jocley Araujo
[gmx-users] Help with nitrile group in complx protein-ligand md Justin A. Lemkul
[gmx-users] Help with nitrile group in complx protein-ligand md David van der Spoel
[gmx-users] help-Test set Zhanglin Ni
[gmx-users] help-Test set Justin A. Lemkul
[gmx-users] help: z-direction component of box vector becomes 0.00000 when using pdc = xy after Yinhe Zhang
[gmx-users] help: z-direction component of box vector becomes 0.00000 when using pdc = xy after Berk Hess
[gmx-users] help: z-direction component of box vector becomes 0.00000 when using pdc = xy after Yinhe Zhang
[gmx-users] Hi .. Gr8 offer chandrabhanseniya at gmail.com
[gmx-users] Hi .. Gr8 offer chandrabhanseniya at gmail.com
Hi: Re: [gmx-users] Hello: Forcefield and potentials for DNA-zinc finger complex Tsjerk Wassenaar
Hi: Re: [gmx-users] Hello: Forcefield and potentials for DNA-zinc finger complex Tsjerk Wassenaar
[gmx-users] How are bond parameters linked to atoms when using #include? darrellk at ece.ubc.ca
[gmx-users] How are bond parameters linked to atoms when using #include? Justin A. Lemkul
[gmx-users] How can i know if the protein swell during the MD simulation? Chih-Ying Lin
[gmx-users] How can i know if the protein swell during the MD simulation? Justin A. Lemkul
[gmx-users] How can i know if the protein swell during the MD simulation? Tsjerk Wassenaar
[gmx-users] How can i know if the protein swell during the MD simulation? Bhanu
[gmx-users] How can i know if the protein swell during the MD simulation? Tsjerk Wassenaar
[gmx-users] How can i know if the protein swell during the MD simulation? Marius Retegan
[gmx-users] How can i know if the protein swell during the MD simulation? Tsjerk Wassenaar
[gmx-users] how can i know the center of the cleft of protein? Chih-Ying Lin
[gmx-users] how can i know the center of the cleft of protein? David van der Spoel
[gmx-users] how to add shear force in gromacs He, Yang
[gmx-users] how to apply shear force He, Yang
[gmx-users] how to apply shear force Berk Hess
[gmx-users] How to build a lipid bilayer in GROMACS? Anirban Ghosh
[gmx-users] How to build a lipid bilayer in GROMACS? Justin A. Lemkul
[gmx-users] How to build a lipid bilayer in GROMACS? Jack Shultz
[gmx-users] How to choose the counter ions for proteins? Chih-Ying Lin
[gmx-users] How to choose the counter ions for proteins? Mark Abraham
[gmx-users] How to compile C++ propgram with xdrfile library? Semen Esilevsky
[gmx-users] How to compile C++ propgram with xdrfile library? David van der Spoel
[gmx-users] How to compile C++ propgram with xdrfile library? Semen Esilevsky
[gmx-users] How to compile C++ propgram with xdrfile library? David van der Spoel
[gmx-users] How to compile C++ propgram with xdrfile library? Semen Esilevsky
[gmx-users] How to compile C++ propgram with xdrfile library? Semen Esilevsky
[gmx-users] How to compile C++ propgram with xdrfile library? Jussi Lehtola
[gmx-users] How to concatenate several input trajectory ﬁles in sorted order in GMX4.01 zhang
Re: [gmx-users] How to concatenate several input trajectory ﬁles in sorted order in GMX4.01 Justin A. Lemkul
[gmx-users] How to create .pdb files? Joseph Johnson
[gmx-users] How to create .pdb files? Justin A. Lemkul
[gmx-users] How to create .pdb files? Justin A. Lemkul
[gmx-users] how to do MD simulation of protein with Fe-S cluster amri ta
[gmx-users] how to do MD simulation of protein with Fe-S cluster Mark Abraham
[gmx-users] how to make the different displacement of ligand around protein? Justin A. Lemkul
[gmx-users] how to make the different displacement of ligand around protein? Chih-Ying Lin
[gmx-users] how to perform Combined essential dynamics analysis and procedure! xi zhao
[gmx-users] How to print out .gro per 100 ps? Chih-Ying Lin
[gmx-users] How to print out .gro per 100 ps? Mark Abraham
[gmx-users] How to remove water from lipid bilayer core Anirban Ghosh
[gmx-users] How to remove water from lipid bilayer core Pawan Kumar
[gmx-users] How to set up dihedrals Thomas Schlesier
[gmx-users] How to set up dihedrals Mark Abraham
[gmx-users] How to set up the cut-off radius Yanmei Song
[gmx-users] How to set up the cut-off radius Yinhe Zhang
[gmx-users] how to setup the pH value Chih-Ying Lin
[gmx-users] how to setup the pH value Justin A. Lemkul
[gmx-users] how to setup the pH value David van der Spoel
[gmx-users] how to solve the warning Jinyao Wang
[gmx-users] how to solve the warning Justin A. Lemkul
[gmx-users] how to use atom2cg.awk xi zhao
[gmx-users] how to use atom2cg.awk Justin A. Lemkul
[gmx-users] how to use atom2cg.awk xi zhao
[gmx-users] how to use atom2cg.awk Justin A. Lemkul
[gmx-users] how to use atom2cg.awk xi zhao
[gmx-users] how to use atom2cg.awk Justin A. Lemkul
[gmx-users] how to use atom2cg.awk xi zhao
[gmx-users] how to use atom2cg.awk Justin A. Lemkul
[gmx-users] how to use atom2cg.awk Justin A. Lemkul
[gmx-users] how to use atom2cg.awk Justin A. Lemkul
[gmx-users] in vacuo minimization of a multimeric protein Anna Marabotti
[gmx-users] in vacuo minimization of a multimeric protein Justin A. Lemkul
[gmx-users] in vacuo minimization of a multimeric protein Anna Marabotti
[gmx-users] Input/Output error using grompp Stefano Meliga
[gmx-users] Input/Output error using grompp David van der Spoel
[gmx-users] Input/Output error using grompp Martin Höfling
[gmx-users] Installation Problem farzaneh fatahi
[gmx-users] Installation Problem Mark Abraham
[gmx-users] Installing topolbuild vivek sharma
[gmx-users] Installing topolbuild Bruce D. Ray
[gmx-users] introducing constrain anirban polley
[gmx-users] itp and gro files Payman Pirzadeh
[gmx-users] itp and gro files Justin A. Lemkul
[gmx-users] itp and gro files Payman Pirzadeh
[gmx-users] lateral stress and surface tension anirban polley
[gmx-users] lateral stress and surface tension Dallas B. Warren
[gmx-users] Lennard-Jones 9-6 potential problems zhangjianguo2002
[gmx-users] Lennard-Jones 9-6 potential problems David van der Spoel
[gmx-users] Lennard-Jones 9-6 potential problems Berk Hess
[gmx-users] Lennard-Jones 9-6 potential problems zhangjianguo2002
[gmx-users] Lennard-Jones 9-6 potential problems David van der Spoel
[gmx-users] Lennard-Jones 9-6 potential problems Mark Abraham
[gmx-users] Lennard-Jones 9-6 potential problems zhangjianguo2002
[gmx-users] Lennard-Jones 9-6 potential problems David van der Spoel
[gmx-users] LINCS warnings (6153) Ernesto Andres Román
[gmx-users] LINCS warnings (6153) David van der Spoel
[gmx-users] LINCS warnings (6153) Vishwanath Dalvi
[gmx-users] Lingering problems with the test set Justin A. Lemkul
[gmx-users] Lingering problems with the test set Mark Abraham
[gmx-users] lipid_posre.itp file nitu sharma
[gmx-users] lipid_posre.itp file Mark Abraham
[gmx-users] lipid_posre.itp file Nuno Azoia
[gmx-users] Lipids forming unsual bonds Anirban Ghosh
[gmx-users] Lipids forming unsual bonds Dallas B. Warren
[gmx-users] Lipids forming unsual bonds Mark Abraham
[gmx-users] Lipids forming unsual bonds chris.neale at utoronto.ca
[gmx-users] RE: Lipids forming unsual bonds Anirban Ghosh
[gmx-users] local pressure anirban polley
[gmx-users] local pressure Dallas B. Warren
[gmx-users] local pressure calculation anirban polley
[gmx-users] Re: Long-range (LR) energies in gromacs v3.3.3 Justin A. Lemkul
[gmx-users] Re: Long-range (LR) energies in gromacs v3.3.3 Justin A. Lemkul
[gmx-users] make install-mdrun Payman Pirzadeh
[gmx-users] make install-mdrun Diego Enry Gomes
[gmx-users] make install-mdrun Payman Pirzadeh
[gmx-users] make install-mdrun Justin A. Lemkul
[gmx-users] make install-mdrun Payman Pirzadeh
[gmx-users] Martini+elastic network Enrico Spiga
[gmx-users] Martini+elastic network Justin A. Lemkul
[gmx-users] maximum size for Freeze group? ilona.baldus at bioquant.uni-heidelberg.de
[gmx-users] maximum size for Freeze group? Mark Abraham
[gmx-users] MD with RMSD restraint Sam Moors
[gmx-users] MD with RMSD restraint Mark Abraham
[gmx-users] MD with RMSD restraint David van der Spoel
[gmx-users] Re: MD with RMSD restraint Sam Moors
[gmx-users] Re: MD with RMSD restraint David van der Spoel
[gmx-users] Re: MD with RMSD restraint Massimiliano Bonomi
[gmx-users] Re: MD with RMSD restraint Ran Friedman
[gmx-users] Re: MD with RMSD restraint Sam Moors
[gmx-users] Re: MD with RMSD restraint David van der Spoel
[gmx-users] Re: MD with RMSD restraint Marc Baaden
[gmx-users] mdp file for local pressure anirban polley
[gmx-users] mdp file for local pressure Dallas B. Warren
[gmx-users] mdp file for local pressure Cheong Wee Loong, Daniel
[gmx-users] mdp file to calculate local pressure anirban polley
[gmx-users] mdp file to calculate local pressure Justin A. Lemkul
[gmx-users] mdp file to calculate local pressure anirban polley
[gmx-users] mdp file to calculate local pressure Justin A. Lemkul
[gmx-users] mdp file to calculate local pressure anirban polley
[gmx-users] mdp file to calculate local pressure Justin A. Lemkul
[gmx-users] membrane protein simulation Samik Bhattacharya
[gmx-users] membrane protein simulation Justin A. Lemkul
[gmx-users] membrane protein simulation Samik Bhattacharya
[gmx-users] missing atoms Kukol, Andreas
[gmx-users] missing atoms Mark Abraham
[gmx-users] missing atoms swatik at ncbs.res.in
[gmx-users] modify lennard jones parameters to time-dependent Xinghua Shi
[gmx-users] modify lennard jones parameters to time-dependent Mark Abraham
[gmx-users] modify lennard jones parameters to time-dependent David van der Spoel
[gmx-users] Molecule Jumps darrellk at ece.ubc.ca
[gmx-users] Molecule Jumps Mark Abraham
[gmx-users] Re: Molecule Jumps darrellk at ece.ubc.ca
[gmx-users] Re: Molecule Jumps Mark Abraham
[gmx-users] mpi problem jagannath mondal
[gmx-users] mpi problem during installation Itamar Kass
[gmx-users] mpi problem during installation Mark Abraham
[gmx-users] multiple outputs in mdrun with gromacs-4.0.3 vivek sharma
[gmx-users] multiple outputs in mdrun with gromacs-4.0.3 Mark Abraham
[gmx-users] Nanoparticles does not interact osmair oliveira
[gmx-users] Nanoparticles does not interact p.yamin at fz-juelich.de
[gmx-users] Nanoparticles does not interact osmair oliveira
[gmx-users] Nanoparticles does not interact Mark Abraham
[gmx-users] Nanoparticles does not interact osmair oliveira
[gmx-users] Nanoparticles does not interact Mark Abraham
[gmx-users] No default Angle types darrellk at ece.ubc.ca
[gmx-users] No default Angle types Justin A. Lemkul
[gmx-users] No default Angle types darrellk at ece.ubc.ca
[gmx-users] No default Angle types Justin A. Lemkul
[gmx-users] No default LJ-14 types Zuzana Benkova
[gmx-users] No targets specified and no makefile found Stefano Meliga
[gmx-users] No targets specified and no makefile found Justin A. Lemkul
[gmx-users] Non standard amino acids. david.lisgarten at canterbury.ac.uk
[gmx-users] Non standard amino acids. Mark Abraham
[gmx-users] Normal Mode Analysis Franzi Hoffgaard
[gmx-users] Normal Mode Analysis Berk Hess
[gmx-users] Normal Mode Analysis Franzi Hoffgaard
[gmx-users] Normal Mode Analysis Berk Hess
[gmx-users] Normal Mode Analysis Franzi Hoffgaard
[gmx-users] Normal Mode Analysis Berk Hess
[gmx-users] Normal Mode Analysis Franzi Hoffgaard
[gmx-users] oplsaa parametrization R. A.
[gmx-users] oplsaa parametrization Ran Friedman
[gmx-users] oplsaa parametrization R. A.
[gmx-users] oplsaa parametrization Ran Friedman
[gmx-users] oplsaa parametrization R. A.
[gmx-users] Re: oplsaa parametrization Alan
[gmx-users] P-coupling in vacuum, inflexibility Pavel Semenyuk
[gmx-users] P-coupling in vacuum, inflexibility Tsjerk Wassenaar
[gmx-users] P-coupling in vacuum, inflexibility Pavel Semenyuk
[gmx-users] P-coupling in vacuum, inflexibility Pavel Semenyuk
[gmx-users] Packages for building topologies vivek sharma
[gmx-users] Packages for building topologies Justin A. Lemkul
[gmx-users] Parallel installation core2 quad -mpi? Peyman Yamin
[gmx-users] Parallel installation core2 quad -mpi? Mark Abraham
[gmx-users] Parallel installation core2 quad -mpi? Peyman Yamin
[gmx-users] Parallel installation core2 quad -mpi? Mark Abraham
[gmx-users] parameter for iron(HEME) and S-Cys Zhanglin Ni
[gmx-users] parameter for iron(HEME) and S-Cys Mark Abraham
[gmx-users] parameter of RB potential for OPLS force field Yanmei Song
[gmx-users] Re: parameter of RB potential for OPLS force field Justin A. Lemkul
[gmx-users] Re: parameter of RB potential for OPLS force field Yanmei Song
[gmx-users] Re: parameter of RB potential for OPLS force field Justin A. Lemkul
[gmx-users] Re: parameter of RB potential for OPLS force field Yanmei Song
[gmx-users] Re: parameter of RB potential for OPLS force field Justin A. Lemkul
[gmx-users] Re: parameter of RB potential for OPLS force field Yanmei Song
[gmx-users] Re: parameter of RB potential for OPLS force field Mark Abraham
[gmx-users] pdb2gmx does not recognize residues Rolf Erwin Isele-Holder
[gmx-users] pdb2gmx does not recognize residues Kukol, Andreas
[gmx-users] pdb2gmx does not recognize residues Nuno Azoia
[gmx-users] pdb2gmx file error yimnai forlemu
[gmx-users] Re: pdb2gmx file error Justin A. Lemkul
[gmx-users] position restrain Software inconsistency error: Some interactions seem to be assigned multiple times Mark Abraham
[gmx-users] position restrain Software inconsistency error: Some interactions seem to be assigned multiple times Creighton Buie
[gmx-users] positions and velocities of COM of whole water molecules instead of those of individual atoms? Justin A. Lemkul
[gmx-users] positions and velocities of COM of whole water molecules instead of those of individual atoms? bohumir
[gmx-users] positions and velocities of COM of whole water molecules instead of those of individual atoms? Jussi Lehtola
[gmx-users] positions and velocities of COM of whole water molecules instead of those of individual atoms? bohumir
[gmx-users] Pressure coupling and cut-off Yanmei Song
[gmx-users] Pressure coupling and cut-off Justin A. Lemkul
[gmx-users] Pressure coupling and cut-off Yanmei Song
[gmx-users] Pressure coupling and cut-off Justin A. Lemkul
[gmx-users] Pressure coupling and cut-off Yanmei Song
[gmx-users] Pressure coupling and cut-off Justin A. Lemkul
[gmx-users] problem in DNA simulation nitu sharma
[gmx-users] problem in DNA simulation Dallas B. Warren
[gmx-users] Problem in Martini simulation with gromacs version 4.0.4 works fine with gromacs 3.3.1 error G96Angle of 2395 missing maria goranovic
[gmx-users] Problem in Martini simulation with gromacs version 4.0.4 works fine with gromacs 3.3.1 error G96Angle of 2395 missing XAvier Periole
[gmx-users] problem in neutralising my system nitu sharma
[gmx-users] problem in neutralising my system Justin A. Lemkul
[gmx-users] problem in removal of unwanted water from hydrophobic core of lipid bilayer nitu sharma
[gmx-users] problem in removal of unwanted water from hydrophobic core of lipid bilayer Justin A. Lemkul
[gmx-users] problem in simulation of DNA-protein complex nitu sharma
[gmx-users] problem in simulation of DNA-protein complex Mark Abraham
[gmx-users] problem in simulation of DNA-protein complex Dallas B. Warren
[gmx-users] problem in simulation of dna-protein complex nitu sharma
[gmx-users] problem in simulation of dna-protein complex Mark Abraham
[gmx-users] problem regarding dna-protein simulation nitu sharma
[gmx-users] problem regarding dna-protein simulation Justin A. Lemkul
[gmx-users] Problem with energy min. in membrane tutorial Ragnarok sdf
[gmx-users] Problem with energy min. in membrane tutorial Justin A. Lemkul
[gmx-users] problem with genion nitu sharma
[gmx-users] problem with genion Justin A. Lemkul
[gmx-users] problem with genion Pawan Kumar
[gmx-users] problem with mpi Mark Abraham
[gmx-users] problem with mpi jagannath mondal
[gmx-users] problem with particle decomposition in gromacs 4.0.4 Suman Chakrabarty
[gmx-users] problem with particle decomposition in gromacs 4.0.4 Berk Hess
[gmx-users] problem with particle decomposition in gromacs 4.0.4 Suman Chakrabarty
[gmx-users] Problem with pdb2gmx when used with OPLS and TIP4P Manik Mayur
[gmx-users] Problem with pdb2gmx when used with OPLS and TIP4P Justin A. Lemkul
[gmx-users] Problem with pdb2gmx when used with OPLS and TIP4P Manik Mayur
[gmx-users] Problem with pdb2gmx when used with OPLS and TIP4P Justin A. Lemkul
[gmx-users] Problem with pdb2gmx when used with OPLS and TIP4P Manik Mayur
[gmx-users] Problem with protein in lipid bilayer simulation Anirban Ghosh
[gmx-users] Problem with protein in lipid bilayer simulation Justin A. Lemkul
[gmx-users] Re: Problem with protein in lipid bilayer simulation Anirban Ghosh
[gmx-users] Re: Problem with protein in lipid bilayer simulation Pawan Kumar
[gmx-users] Re: Problem with protein in lipid bilayer simulation Anirban Ghosh
[gmx-users] Re: Problem with protein in lipid bilayer simulation Pawan Kumar
[gmx-users] problem with system neutralization Stefano Meliga
[gmx-users] problem with system neutralization Pawan Kumar
[gmx-users] problem with system neutralization Stefano Meliga
[gmx-users] problem with system neutralization Pawan Kumar
[gmx-users] problem with system neutralization Justin A. Lemkul
[gmx-users] problem with system neutralization Stefano Meliga
[gmx-users] problem with system neutralization Justin A. Lemkul
[gmx-users] problem with the creating of a top-file Saskia Frenzel
[gmx-users] problem with the creating of a top-file Mark Abraham
[gmx-users] Problems with tabulated potentials Harry Saavedra
[gmx-users] protein falls apart in energy minimization Zhong Zheng
[gmx-users] protein falls apart in energy minimization Mark Abraham
[gmx-users] protein falls apart in energy minimization Pawan Kumar
[gmx-users] protein falls apart in energy minimization Zhong Zheng
[gmx-users] protein falls apart in energy minimization Justin A. Lemkul
[gmx-users] Protein is not at the centre of octahedron box sukesh chandra gain
[gmx-users] Protein is not at the centre of octahedron box Justin A. Lemkul
[gmx-users] protein molecular weight? Chih-Ying Lin
[gmx-users] protein molecular weight? Justin A. Lemkul
[gmx-users] protein molecular weight? Chih-Ying Lin
[gmx-users] protein molecular weight? Mark Abraham
[gmx-users] Protein-Ligand Docking? Chih-Ying Lin
[gmx-users] Protein-Ligand Docking? Justin A. Lemkul
[gmx-users] Protein-Ligand Docking? Dallas B. Warren
[gmx-users] Protein-Ligand Docking? Chih-Ying Lin
[gmx-users] Protein-Ligand Docking? Justin A. Lemkul
[gmx-users] Protein-Ligand Docking? Mark Abraham
[gmx-users] Protein-Ligand Docking? Chih-Ying Lin
[gmx-users] Protein-Ligand Docking? Dallas B. Warren
[gmx-users] pull code problem Andrei Neamtu
[gmx-users] pull code problem Berk Hess
[gmx-users] pull code problem Andrei Neamtu
[gmx-users] pull code problem Berk Hess
[gmx-users] pull code problem solved.. Andrei Neamtu
[gmx-users] question about force field parameter Zhanglin Ni
[gmx-users] question about force field parameter Mark Abraham
[gmx-users] question about force field parameter Yan Chai
[gmx-users] question about force field parameter Mark Abraham
[gmx-users] question about force field parameter David van der Spoel
[gmx-users] question about force field parameter Yan Chai
[gmx-users] question about force field parameter David van der Spoel
[gmx-users] Re: question about force field parameter Zhanglin Ni
[gmx-users] Re: question about force field parameter Tsjerk Wassenaar
[gmx-users] Question about g_cluster Jacob Durrant
[gmx-users] Question about g_cluster Mark Abraham
[gmx-users] question about positive potential Baofu Qiao
[gmx-users] question about positive potential Mark Abraham
[gmx-users] question about positive potential Baofu Qiao
[gmx-users] question about positive potential Mark Abraham
[gmx-users] Questions to pullx.xvg Thomas Schlesier
[gmx-users] Questions to pullx.xvg Berk Hess
[gmx-users] Questions to pullx.xvg Thomas Schlesier
[gmx-users] RDF in GMX 4 Eudes Fileti
[gmx-users] RDF in GMX 4 Justin A. Lemkul
[gmx-users] RE: RE: RDF in GMX 4 (Justin) Eudes Fileti
[gmx-users] RE: RE: RDF in GMX 4 (Justin) Dallas B. Warren
[gmx-users] RE: RE: RDF in GMX 4 (Justin) Justin A. Lemkul
[gmx-users] Recentering box after simulation of self-assembly of a bilayer machuque
[gmx-users] Re:Re: Recentering box after simulation of self-assembly of a bilayer (Justin A. Lemkul) maria goranovic
[gmx-users] Recentering box after simulation of self-assembly of a bilayer Justin A. Lemkul
[gmx-users] Recentering box after simulation of self-assembly of a bilayer maria goranovic
[gmx-users] Reducing Size of Data Jack Shultz
[gmx-users] Reducing Size of Data Justin A. Lemkul
[gmx-users] reg MOPAC/gromacs installation vidhya sankar
[gmx-users] reg MOPAC/gromacs installation vidhya sankar
[gmx-users] reg MOPAC/gromacs installation Mark Abraham
[gmx-users] reg MOPAC/gromacs installations vidhya sankar
[gmx-users] reg MOPAC/gromacs installations Mark Abraham
[gmx-users] Re: reg Mopac/gromacs installations reply please Justin A. Lemkul
[gmx-users] Regarding the broken compiler gcc 4.1.x rashmi_chem at iitb.ac.in
[gmx-users] Regarding the broken compiler gcc 4.1.x Jussi Lehtola
[gmx-users] removal of unwanted water from hydrphobic core of lipid Mark Abraham
[gmx-users] removal of unwanted water from hydrphobic core of lipid nitu sharma
[gmx-users] removal of water from hydrophobic core of lipid nitu sharma
[gmx-users] removal of water from hydrophobic core of lipid Justin A. Lemkul
[gmx-users] Replacement for G43b1 force field? Anirban Ghosh
[gmx-users] Replacement for G43b1 force field? Justin A. Lemkul
[gmx-users] Re: Replacement for G43b1 force field? Anirban Ghosh
[gmx-users] Re: Replacement for G43b1 force field? Justin A. Lemkul
[gmx-users] Re: Require help in GROMACS Justin A. Lemkul
[gmx-users] restraining ligand for position restraint simulation Halie Shah
[gmx-users] restraining ligand for position restraint simulation Justin A. Lemkul
[gmx-users] RMS deviation after position restraint dynamics sukesh chandra gain
[gmx-users] RMS deviation after position restraint dynamics Joshua Adelman
[gmx-users] RMS deviation after position restraint dynamics Mark Abraham
[gmx-users] Ryckaert-Bellemans type dihedral Suman Chakrabarty
[gmx-users] Ryckaert-Bellemans type dihedral Mark Abraham
[gmx-users] Segmentation fault Chih-Ying Lin
[gmx-users] Segmentation fault Justin A. Lemkul
[gmx-users] segmentation fault - extending trajectory uwing gmx4.0.4 on 16 processors with PME Mark Abraham
[gmx-users] segmentation fault - extending trajectory uwing gmx4.0.4 on 16 processors with PME Ángel Piñeiro
[gmx-users] Selection of force field ANINDITA GAYEN
[gmx-users] Selection of force field Tsjerk Wassenaar
[gmx-users] Selection of force fields ANINDITA GAYEN
[gmx-users] Selection of force fields Tsjerk Wassenaar
[gmx-users] Shared library version binary on CYGWIN Makoto Yoneya
[gmx-users] Shared library version binary on CYGWIN Mark Abraham
[gmx-users] Shared library version binary on CYGWIN Makoto Yoneya
[gmx-users] Shared library version binary on CYGWIN Jussi Lehtola
[gmx-users] Shared library version binary on CYGWIN Makoto Yoneya
[gmx-users] Shared library version binary on CYGWIN Mark Abraham
[gmx-users] Shared library version binary on CYGWIN Makoto Yoneya
[gmx-users] Shared library version binary on CYGWIN Mark Abraham
[gmx-users] shift function for vdwtype and density Yanmei Song
[gmx-users] shift function for vdwtype and density Mark Abraham
[gmx-users] shift function for vdwtype and density Yanmei Song
[gmx-users] shift function for vdwtype and density Justin A. Lemkul
[gmx-users] shift function for vdwtype and density Yanmei Song
[gmx-users] shift function for vdwtype and density Justin A. Lemkul
[gmx-users] shift function for vdwtype and density Yanmei Song
[gmx-users] shift function for vdwtype and density Justin A. Lemkul
[gmx-users] shift function for vdwtype and density Justin A. Lemkul
[gmx-users] shift function for vdwtype and density Yanmei Song
[gmx-users] shift function for vdwtype and density David van der Spoel
[gmx-users] shift function for vdwtype and density Yanmei Song
[gmx-users] shift function for vdwtype and density Yanmei Song
[gmx-users] shift function for vdwtype and density Mark Abraham
[gmx-users] simulation of DNA model nitu sharma
[gmx-users] simulation of DNA model Justin A. Lemkul
[gmx-users] simulation of protein in popc box Samik Bhattacharya
[gmx-users] simulation of protein in popc box Pawan Kumar
[gmx-users] simulation of protein in popc box Samik Bhattacharya
[gmx-users] simulation of protein in popc box Justin A. Lemkul
[gmx-users] simulation of protein in popc box Pawan Kumar
[gmx-users] solution molecules cannot be set by mdrun after neutralization Stefano Meliga
[gmx-users] Re: solution molecules cannot be set by mdrun after neutralization Stefano Meliga
[gmx-users] Re: solution molecules cannot be set by mdrun after neutralization Justin A. Lemkul
[gmx-users] Re: solution molecules cannot be set by mdrun after neutralization Mark Abraham
[gmx-users] Re: solution molecules cannot be set by mdrun after neutralization Stefano Meliga
[gmx-users] Re: solution molecules cannot be set by mdrun after neutralization Justin A. Lemkul
[gmx-users] Some molecules disconnected into many parts after EM Yanmei Song
[gmx-users] Some molecules disconnected into many parts after EM Justin A. Lemkul
[gmx-users] Some molecules disconnected into many parts after EM Payman Pirzadeh
[gmx-users] Some molecules disconnected into many parts after EM Yanmei Song
[gmx-users] Some molecules disconnected into many parts after EM Justin A. Lemkul
[gmx-users] Some molecules disconnected into many parts after EM Yanmei Song
[gmx-users] Some molecules disconnected into many parts after EM Yanmei Song
[gmx-users] Some molecules disconnected into many parts after EM Justin A. Lemkul
[gmx-users] some puzzled about the dihedral paramaters Jinyao Wang
[gmx-users] some puzzled about the dihedral paramaters Mark Abraham
[gmx-users] Strange assignment of atoms to processors with pd Erik Marklund
[gmx-users] Strange assignment of atoms to processors with pd Erik Marklund
[gmx-users] Strange assignment of atoms to processors with pd David van der Spoel
[gmx-users] Strange assignment of atoms to processors with pd Erik Marklund
[gmx-users] Strange assignment of atoms to processors with pd David van der Spoel
[gmx-users] Strange assignment of atoms to processors with pd Berk Hess
[gmx-users] Strange assignment of atoms to processors with pd Erik Marklund
[gmx-users] Strange assignment of atoms to processors with pd Erik Marklund
[gmx-users] Strange assignment of atoms to processors with pd Berk Hess
[gmx-users] structure factor using g_rdf: grid option does not work Suman Chakrabarty
[gmx-users] Test Particle Insertion Problem-Gromacs 4.0.3 Harry Saavedra
[gmx-users] Test Particle Insertion Problem-Gromacs 4.0.3 Mark Abraham
[gmx-users] Test Particle Insertion Problem-Gromacs 4.0.3 Berk Hess
[gmx-users] Test Particle Insertion Problem-Gromacs 4.0.3 Harry Saavedra
[gmx-users] Test suit failures Bert
[gmx-users] Test suit failures Justin A. Lemkul
[gmx-users] Test suit failures Mark Abraham
[gmx-users] Test-set Justin A. Lemkul
[gmx-users] Test-set Justin A. Lemkul
[gmx-users] Test-set Dallas B. Warren
[gmx-users] Test-set Zhanglin Ni
[gmx-users] Test-set Justin A. Lemkul
[gmx-users] Test-set Zhanglin Ni
[gmx-users] Test-set Zhanglin Ni
[gmx-users] Test-set Zhanglin Ni
[gmx-users] TestBed in MPI not working Jones de Andrade
[gmx-users] TestBed in MPI not working Justin A. Lemkul
[gmx-users] TestBed in MPI not working Jones de Andrade
[gmx-users] TestBed in MPI not working Justin A. Lemkul
[gmx-users] TestBed in MPI not working Jones de Andrade
[gmx-users] TestBed in MPI not working Justin A. Lemkul
[gmx-users] TestBed in MPI not working Jones de Andrade
[gmx-users] TestBed in MPI not working Mark Abraham
[gmx-users] TestBed in MPI not working Jones de Andrade
[gmx-users] TestBed in MPI not working Jones de Andrade
[gmx-users] TestBed in MPI not working Justin A. Lemkul
[gmx-users] TestBed in MPI not working Jones de Andrade
[gmx-users] TestBed in MPI not working Mark Abraham
[gmx-users] The default pH =7.0 ??? Chih-Ying Lin
[gmx-users] The default pH =7.0 ??? Mark Abraham
[gmx-users] The default pH =7.0 ??? and the protonation state after pdb2gmx Mark Abraham
[gmx-users] The default pH =7.0 ??? and the protonation state after pdb2gmx Joshua Adelman
[gmx-users] The default pH =7.0 ??? and the protonation state after pdb2gmx Tsjerk Wassenaar
[gmx-users] The default pH =7.0 ??? and the protonation state after pdb2gmx Chih-Ying Lin
[gmx-users] The default pH =7.0 ??? and the protonation state after pdb2gmx Chih-Ying Lin
[gmx-users] The system setup Chih-Ying Lin
[gmx-users] The system setup Mark Abraham
[gmx-users] TIP5P - dummies sit on top of each other ilona.baldus at bioquant.uni-heidelberg.de
[gmx-users] TIP5P - dummies sit on top of each other Justin A. Lemkul
[gmx-users] TIP5P - dummies sit on top of each other David van der Spoel
[gmx-users] topology file with grompp program วันเวลา อมรนพ
[gmx-users] topology file with grompp program Justin A. Lemkul
[gmx-users] topology of HEO compound in .rtp for G96 ff Egidijus Kuprusevicius
[gmx-users] topology of HEO compound in .rtp for G96 ff Justin A. Lemkul
[gmx-users] tpr files give stable run under v3.3, blows-up under v3.3.2 Paul Rowntree
[gmx-users] tpr files give stable run under v3.3, blows-up under v3.3.2 Mark Abraham
[gmx-users] Twin range cut-off's: rlist and rvdw Yan Chai
[gmx-users] Twin range cut-off's: rlist and rvdw Jussi Lehtola
[gmx-users] Twin range cut-off's: rlist and rvdw Yan Chai
[gmx-users] Twin range cut-off's: rlist and rvdw Jussi Lehtola
[gmx-users] Twin range cut-off's: rlist and rvdw Berk Hess
[gmx-users] Twin range cut-off's: rlist and rvdw Yan Chai
[gmx-users] UA simulation of PEO melt Zuzana Benkova
[gmx-users] UA simulation of PEO melt patrick fuchs
[gmx-users] UA simulation of PEO melt Zuzana Benkova
[gmx-users] Re: Re: Unexplained crashes with Gromacs-4.0 & Neighbor Searching Justin A. Lemkul
[gmx-users] Re: Re: Unexplained crashes with Gromacs-4.0 & Neighbor Searching Mark Abraham
[gmx-users] Re: Unexplained crashes with Gromacs-4.0 & Neighbor Searching Inon Sharony
[gmx-users] Re: Unexplained crashes with Gromacs-4.0 & Neighbor Searching Justin A. Lemkul
[gmx-users] Re: Re: Unexplained crashes with Gromacs-4.0 & Neighbor Searching Inon Sharony
[gmx-users] updated OPLS/AA Alan
[gmx-users] updated OPLS/AA Andreas Kring
[gmx-users] v-rescale - harmonic oscillator servaas
[gmx-users] v-rescale - harmonic oscillator Berk Hess
[gmx-users] Re: v-rescale - harmonic oscillator servaas
[gmx-users] Re: v-rescale - harmonic oscillator Berk Hess
[gmx-users] v-rescale - harmonic oscillator servaas
[gmx-users] v-rescale - harmonic oscillator Berk Hess
[gmx-users] Re: v-rescale - harmonic oscillator servaas
[gmx-users] Re: v-rescale - harmonic oscillator Berk Hess
[gmx-users] Re: v-rescale - harmonic oscillator servaas
[gmx-users] Re: v-rescale - harmonic oscillator Berk Hess
[gmx-users] Re: v-rescale - harmonic oscillator Giovanni Bussi
[gmx-users] Re: v-rescale - harmonic oscillator servaas
[gmx-users] Re: v-rescale - harmonic oscillator Berk Hess
[gmx-users] virtual sites zhang
[gmx-users] virtual sites Mark Abraham
[gmx-users] Viscosity using periodic perturbation method Yanmei Song
[gmx-users] Viscosity using periodic perturbation method Berk Hess
[gmx-users] Viscosity using periodic perturbation method Yanmei Song
[gmx-users] Viscosity using periodic perturbation method Yanmei Song
[gmx-users] want to calculate pressure from virial anirban polley
[gmx-users] want to calculate pressure from virial David van der Spoel
[gmx-users] Warning: Pressure scaling more than 1%. Zhanglin Ni
[gmx-users] Warning: Pressure scaling more than 1%. Mark Abraham
[gmx-users] Warning: Pressure scaling more than 1%. Pawan Kumar
[gmx-users] Warning: Pressure scaling more than 1%. Mark Abraham
[gmx-users] What becomes of kinetic energy in local minima? yutong.zhao at utoronto.ca
[gmx-users] What becomes of kinetic energy in local minima? Mark Abraham
[gmx-users] What is the purpose that we make the bond constraints? Chih-Ying Lin
[gmx-users] What is the purpose that we make the bond constraints? David van der Spoel
[gmx-users] What is the purpose that we make the bond constraints? Justin A. Lemkul
[gmx-users] Where are the good tutorials? Joseph Johnson
[gmx-users] Where are the good tutorials? Justin A. Lemkul
[gmx-users] Where are the good tutorials? Rodrigo faccioli
[gmx-users] Where are the good tutorials? Tsjerk Wassenaar
[gmx-users] where is the normalization direction in radial axial g_densmap plots? Berk Hess
[gmx-users] where is the normalization direction in radial axial g_densmap plots? maria goranovic
[gmx-users] Why does protein carry charges? Chih-Ying Lin
[gmx-users] Why does protein carry charges? jadelman at berkeley.edu
[gmx-users] Why NaCl and KCl solution? Chih-Ying Lin
[gmx-users] Why NaCl and KCl solution? David van der Spoel
[gmx-users] Why NaCl and KCl solution? Justin A. Lemkul
[gmx-users] Why NaCl and KCl solution? Lucio Ricardo Montero Valenzuela
[gmx-users] wrong number of control atoms (3 iso 4) on line nitu sharma
[gmx-users] wrong number of control atoms (3 iso 4) on line Justin A. Lemkul
[gmx-users] x2top and OPLS-AA vs. fudged 1-4 interactions Vasilii Artyukhov
[gmx-users] x2top taking too long Alan
[gmx-users] x2top taking too long Justin A. Lemkul
[gmx-users] x2top taking too long David van der Spoel
[gmx-users] xdrfile license Jussi Lehtola
[gmx-users] xdrfile license David van der Spoel

Last message date: Sun May 31 21:51:49 CEST 2009
Archived on: Thu Nov 14 12:06:49 CET 2013

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