[gmx-users] how to use atom2cg.awk

[Justin A. Lemkul]

xi zhao wrote:
> 
> 
> Dear Sirs:
>   I wang to know simulate coarse-graied system using gromacs, but I don 
> not know how to use atom2cg.awk to convert CG model!
> Thank you very much!
> 

./atom2cg_v2.1_tryout.awk my.pdb > out.pdb

Note that the script available online needs to be modified to include a $5 
between the $4 and $6 on each line, otherwise you will get an 
incorrectly-formatted .pdb file.

-Justin

> 4 
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-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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