[gmx-users] x2top taking too long

Alan alanwilter at gmail.com
Fri May 8 13:06:05 CEST 2009

Hi there,

So I decided to give a try with x2top.

x2top -f aaa.gro -o aaa.top

However, the program starts and seems to never finishing holding as:
There are 23 name to type translations
Generating bonds from distances...
atom 0

And 'atom 0' stays there while I clearly see my cpu running with x2top.

Mac intel with GMX via Fink.

Many thanks in advance.

Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
Department of Biochemistry, University of Cambridge.
80 Tennis Court Road, Cambridge CB2 1GA, UK.

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