[gmx-users] make install-mdrun

[Payman Pirzadeh]

Thanks Justin.
I thought by default everything should be in downloads.

Payman

-----Original Message-----
From: gmx-users-bounces at gromacs.org [mailto:gmx-users-bounces at gromacs.org]
On Behalf Of Justin A. Lemkul
Sent: May 8, 2009 12:23 PM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] make install-mdrun



Payman Pirzadeh wrote:
> Thanks Diego,
> 
> But, the latest I found on downloads of gromcs webpage was 4.0.3! Is 
> 4.0.4 somewhere else?

The homepage and wiki both have the links to 4.0.4, or you can simply change
the
ftp link to point to gromacs-4.0.4 instead of 4.0.3.

-Justin

> 
>  
> 
> Payman
> 
>  
> 
> *From:* gmx-users-bounces at gromacs.org 
> [mailto:gmx-users-bounces at gromacs.org] *On Behalf Of *Diego Enry Gomes
> *Sent:* May 8, 2009 11:27 AM
> *To:* Discussion list for GROMACS users
> *Subject:* Re: [gmx-users] make install-mdrun
> 
>  
> 
> get gromacs 4.04
> 
>  
> 
> Confirm if you changed the permissions correctly and can write anywhere 
> in /usr/local/  
> 
>  
> 
> Are you doing this as 'root'  or super user (sudo) ? Because if you are 
> just a regular user, will won't be able to change the permissions in 
> /usr/local/. So, configure gmx to be installed in your local dir.
> 
>  
> 
> ./configure --prefix=/global/home/pirzadeh/gmx404 
> 
>  
> 
>  
> 
> On May 8, 2009, at 10:10 AM, Payman Pirzadeh wrote:
> 
> 
> 
> Hi All,
> 
> I realized that I am missing (Lib and bin folders) analysis tools and 
> mdrun MPI. I re-installed the GROMACS 4.0.3, and I found that when I get 
> to 'make install-mdrun' the following messages show up ( I am just 
> copying last lines):
> 
>  
> 
> make[2]: *** [install-libLTLIBRARIES] Error 1
> 
> make[2]: Leaving directory 
> `/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/mdlib'
> 
> make[1]: *** [install-am] Error 2
> 
> make[1]: Leaving directory 
> `/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/mdlib'
> 
> (cd ./src/kernel && make install-mdrun ; exit 0)
> 
> make[1]: Entering directory 
> `/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/kernel'
> 
> /bin/sh ../../config/mkinstalldirs /usr/local/gromacs/bin
> 
> mkdir -p -- /usr/local/gromacs/bin
> 
> mkdir: cannot create directory `/usr/local/gromacs': Permission denied
> 
> make[1]: *** [install-mdrun] Error 1
> 
> make[1]: Leaving directory 
> `/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/kernel'
> 
>   
> 
> I changed the permissions and I am still receiving the same message. I 
> will e appreciated if someone tell me what is going wrong?!
> 
>  
> 
> Payman
> 
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>  
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> 
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-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================


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