[gmx-users] how to use atom2cg.awk

[Justin A. Lemkul]

xi zhao wrote:
> Dear sir :
> how to motify the $5 in details?
> Thank you!
> 

Use a text editor (vi, emacs, gedit, etc), like you would to create any script.

-Justin

> 
> 
> 4 
> <http://cn.webmessenger.yahoo.com/index.php?t=1&to=eWlkPXpoYW94aWl0YzIwMDI-&sig=703fa929658518b2720b087c59cd85f2dabf8844>
> 
> --- *09年5月8日，周五, Justin A. Lemkul /<jalemkul at vt.edu>/* 写道：
> 
> 
>     发件人: Justin A. Lemkul <jalemkul at vt.edu>
>     主题: Re: [gmx-users] how to use atom2cg.awk
>     收件人: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
>     日期: 2009年5月8日,周五,下午6:46
> 
> 
> 
>     xi zhao wrote:
>      >
>      >
>      > Dear Sirs:
>      >   I wang to know simulate coarse-graied system using gromacs, but
>     I don not know how to use atom2cg.awk to convert CG model!
>      > Thank you very much!
>      >
> 
>     ./atom2cg_v2.1_tryout.awk my.pdb > out.pdb
> 
>     Note that the script available online needs to be modified to
>     include a $5 between the $4 and $6 on each line, otherwise you will
>     get an incorrectly-formatted .pdb file.
> 
>     -Justin
> 
>      > 4
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>     -- ========================================
> 
>     Justin A. Lemkul
>     Ph.D. Candidate
>     ICTAS Doctoral Scholar
>     Department of Biochemistry
>     Virginia Tech
>     Blacksburg, VA
>     jalemkul[at]vt.edu | (540) 231-9080
>     http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================