[gmx-users] where is the normalization direction in radial axial g_densmap plots?

maria goranovic mariagoranovic at gmail.com
Mon May 11 18:27:07 CEST 2009

I made a radial-axial density plot using g_densmap. What one gets out is a
3-D number density as a function of radial and axial distance from the
defined axis. So which is the third direction, and how is it averaged out?
Sorry if this is a very elementary question

g_densmap -f protein.xtc -s protein.tpr -n proteinndx -o protein.xpm -b
10000 -e 30000 -bin 0.01 -amax 2 -rmax 2 -dmax 40

Maria G.
Technical University of Denmark
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