[gmx-users] simulation of DNA model

Justin A. Lemkul jalemkul at vt.edu
Wed May 13 14:09:58 CEST 2009

nitu sharma wrote:
> Dear all
>                   I want to ask one basic question i.e is it possible to 
> do simulation of DNA model with gromacs ? If it possible which force 
> field will be suitable for this?

Yes.  Check out the force field .rtp files to see which contain parameters for 
nucleic acids.  You may want the AMBER ports:



> I am waiting for yours reply.
> thanks a lot in advance.
> Nitu sharma
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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