[gmx-users] simulation of DNA model

[Justin A. Lemkul]

nitu sharma wrote:
> Dear all
>                   I want to ask one basic question i.e is it possible to 
> do simulation of DNA model with gromacs ? If it possible which force 
> field will be suitable for this?
> 

Yes.  Check out the force field .rtp files to see which contain parameters for 
nucleic acids.  You may want the AMBER ports:

http://chemistry.csulb.edu/ffamber/

-Justin

> I am waiting for yours reply.
> thanks a lot in advance.
> 
> Nitu sharma
> 
> 
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-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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