[gmx-users] problem in simulation of DNA-protein complex

Dallas B. Warren Dallas.Warren at pharm.monash.edu.au
Thu May 14 00:37:43 CEST 2009



Catch ya,

Dr. Dallas Warren
Department of Pharmaceutical Biology and Pharmacology
Pharmacy and Pharmaceutical Sciences, Monash University
381 Royal Parade, Parkville VIC 3010
dallas.warren at pharm.monash.edu.au
+61 3 9903 9167
When the only tool you own is a hammer, every problem begins to resemble
a nail. 

From: gmx-users-bounces at gromacs.org
[mailto:gmx-users-bounces at gromacs.org] On Behalf Of nitu sharma
Sent: Wednesday, 13 May 2009 5:25 PM
To: gmx-users at gromacs.org
Subject: [gmx-users] problem in simulation of DNA-protein complex


Dear all

                    I  am getting problem in running pdb2gmx command on
DNA_protein file . The prblem is
Program pdb2gmx, VERSION 4.0.3
Source code file: resall.c, line: 426

Fatal error:
Residue 'T' not found in residue topology database

So , actually I am unable to understand what should I do to solve this .

Is it possible to get DNA.itp file from anywhere .If anyone have Idea
about this please help me.

I really will be very thankful for him/her.

Nitu sharma

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