[gmx-users] Where are the good tutorials?

Rodrigo faccioli rodrigo_faccioli at uol.com.br
Thu May 14 01:04:45 CEST 2009

The Gromacs tutorial is a good place for us who is stating. Another place is
the Gromacs wiki which has a beginner section (
http://wiki.gromacs.org/index.php/Beginners). In this local, it's possible
you to see some videos.

I suggest for you read the online manual where has the flow chart and get
started sections (


Rodrigo Antonio Faccioli
Ph.D Student in Electrical Engineering
University of Sao Paulo - USP
Engineering School of Sao Carlos - EESC
Department of Electrical Engineering - SEL
Intelligent System in Structure Bioinformatics
Phone: 55 (16) 3373-9366 Ext 229
Curriculum Lattes - http://lattes.cnpq.br/1025157978990218

On Wed, May 13, 2009 at 7:24 PM, Joseph Johnson <helstreak at hotmail.com>wrote:

>  Are there any good tutorials that start from the very beginning, like
> assuming you only have a .pdb file?  It seems that most of the tutorials
> I've found have already generated the files you need and then all you have
> to do is punch in some commands.  Where can I learn to actually write the
> molecular dynamics input file and all that good stuff?
> Thanks for your time and help,
> Casey
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