[gmx-users] problem regarding dna-protein simulation

[Justin A. Lemkul]

nitu sharma wrote:
> Hello mark
> 
>             thanks for your suggestion . but i already did these these 
> things which u suggest . There is nothing about nucleic acid database as 
> i mentioned in my previous mail .
> I have solved the problem regarding aminoacid hydrogen database problem 
> but it not valid in case of nucleic acid thats why I have left the mail 
> on users list .
> so If anybody solved this type of problem previously can help me.
> 

Your problem is not specific to nucleic acids.  Read about the hydrogen 
database; you have an inappropriate amount of control atoms for the type of 
addition you are specifying.

-Justin

> Thanks a lot.
> Nitu sharma
> 
> 
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-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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