[gmx-users] problem regarding dna-protein simulation

Justin A. Lemkul jalemkul at vt.edu
Thu May 14 13:29:44 CEST 2009

nitu sharma wrote:
> Hello mark
>             thanks for your suggestion . but i already did these these 
> things which u suggest . There is nothing about nucleic acid database as 
> i mentioned in my previous mail .
> I have solved the problem regarding aminoacid hydrogen database problem 
> but it not valid in case of nucleic acid thats why I have left the mail 
> on users list .
> so If anybody solved this type of problem previously can help me.

Your problem is not specific to nucleic acids.  Read about the hydrogen 
database; you have an inappropriate amount of control atoms for the type of 
addition you are specifying.


> Thanks a lot.
> Nitu sharma
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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