[gmx-users] How can i know if the protein swell during the MD simulation?

[Justin A. Lemkul]

Chih-Ying Lin wrote:
> HI
> How can i know if the protein swell during the MD simulation?
> 
> What are those indications to "see" the swollen protein?
> 

How do you define the term "swelling?"  This again sounds like another issue on 
defining your own criteria for the expected behavior and reading the manual 
about available analysis tools.

-Justin

> Thank you
> Lin
> 
> 
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-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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