[gmx-users] g_rdf -xy

Hongyan Xiao hyxiao at mail.ipc.ac.cn
Mon May 18 10:12:16 CEST 2009

Dear gmx-users,

I simulate a vapor/water/decane/vapor interface system. The interface is xy 
plane. I want to analysis water structure at the interface using g_rdf 
program along z axis with -xy parameter. But the calculation is hanged as 
the following:

Select a reference group and 1 group
Group     0 (          OW) has  2508 elements
Group     1 (         HW*) has  5016 elements
Select a group: 0
Selected 0: 'OW'
Select a group: 0
Selected 0: 'OW'
trn version: GMX_trn_file (single precision)
Skipping frame   3000 time 4100.000  

I used the following the operation
g_rdf -f  -s  -n  -bin 100 -xy  -o  

Is the runing normal? 
Please give me some suggestion. Thanks a lot!

H.Y. Xiao
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20090518/1741adc5/attachment.html>

More information about the gromacs.org_gmx-users mailing list