[gmx-users] removal of water from hydrophobic core of lipid

[nitu sharma]

 Dear all

                 I want remove water molecules from hydrophobic core of
lipid by using  script Keepbyz.pl by (chris neale) . I want to know  basis
of deciding uprez and lowrez variables . I mean to say how can I decide
which value of uprez and lowrez is suitable for my system protein embedded
in lipid bilayer.

If anyone did these things please help me in solving this problem.

I will be really thankful for that.

Nitu Sharma
School of Life Sciences
Jawaherlal Nehru University
New delhi , India
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