[gmx-users] gromacs on glacier.westgrid.ca

Tsjerk Wassenaar tsjerkw at gmail.com
Tue May 19 20:25:02 CEST 2009

Hi Payman,

That is probably not the only grid facility on which Gromacs may be
run and it would be helpful if you could give specifications of it
(WMS software e.g.), which could give you more response. Also, it
would be helpful if you'd be able to give more information regarding
the output. Then you'd also have to ask the question whether your
problem is grid related or gromacs related. In the former case you'd
better consult support from the facility you're trying to use.



On Tue, May 19, 2009 at 6:19 PM, Payman Pirzadeh <ppirzade at ucalgary.ca> wrote:
> Hi All,
> Is there anyone who is running gromacs on glacier.westgrid.ca machine? If
> yes, I will be appreciated if he/she can tell me how to run gmx on this
> facility. I either get error messages which says either the executable or
> the topology file can not be found.
> Regards,
> Payman
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Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623

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