[gmx-users] simulation of protein in popc box

Samik Bhattacharya samikbhat at yahoo.co.in
Fri May 22 13:12:19 CEST 2009

i am new to Gromacs. i want to simulate a protein inside a lipid box(preferably POPC or POPE). i have generated the protein inside the POPC box complex. But whenever i am going to build the .gro and .top file of that complex with pdb2gmx an error is creeping in saying "Cant find POP in residue topology database". it cant recognise the lipid.itp and popc.itp files which i've already put into the top directory.
plese help me out.
thank you

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