[gmx-users] how to solve the warning

Justin A. Lemkul jalemkul at vt.edu
Mon May 25 04:55:29 CEST 2009

Jinyao Wang wrote:
> hi,gmx-user
> I make a molecule *.itp and force field parameters. When I run editconf and 
> genbox to build a system,there are always a warning like this. "Warning: 
> masses will be determined based on residue and atom names, this can deviate 
> from the real mass of the atom type."
> I don't know how to solve the problem.

This is normal output.  It is probably only relevant if doing more advanced
tricks with editconf, like -princ.  For normal preparation of a box, there
should be no problem.


>         Jinyao Wang         wangjy at ciac.jl.cn           2009-05-25
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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