[gmx-users] Installing topolbuild

vivek sharma viveksharma.iitb at gmail.com
Mon May 25 08:57:17 CEST 2009

Hi Bruce,
I was trying to generate topologies for one ligand using topolbuild. For the
same I used the command "*topolbuild -dir
/home/vivek/topolbuild1_2_1/dat/gromacs/ -ff gmx43a1 -n Bromo-WR99210 -r
and it resulted in an error as follow:
*Fatal error.
Source code file: readmol2.c, line: 580
Bond record does not end with another mol2 record type entry.

>From the error it suggest some problem with the input .mo2 format. Here I am
attaching the  **Bromo-WR99210.mol2 *file, which I used as input. Please
suggest/correct if I am doing some mistake in command line or I am missing

Thanks in advance.

2009/4/16 Bruce D. Ray <brucedray at yahoo.com>

> Apparently some versions of make do not handle my make files the same way
> that
> the version of make I use does.  The attached Makefile might help in such
> cases.
> Sincerely,
> --
> Bruce D. Ray, Ph.D.
> Associate Scientist, and Operations Director
> NMR Center
> Physics Dept.
> 402 N. Blackford St.
> Indianapolis, IN 46202-3273
> ------------------------------
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20090525/66d79ec9/attachment.html>

More information about the gromacs.org_gmx-users mailing list