[gmx-users] Re: force field parameter for ligands

Dechang Li li.dc06 at gmail.com
Mon May 25 12:33:21 CEST 2009

>Message: 1
>Date: Mon, 25 May 2009 01:15:44 -0700
>From: "Zhanglin Ni" <zlni at u.washington.edu>
>Subject: [gmx-users] force field parameter for ligands
>To: <gmx-users at gromacs.org>
>Message-ID: <009701c9dd11$012c1ae0$0301a8c0 at ZN3>
>Content-Type: text/plain; format=flowed; charset="iso-8859-1";
>	reply-type=original
>Dear all,
>where do you usually get topolgy for small molecule ligand or do it 
>manually? Dundee PRODRG Server seems to be capable of making .top for ffgmx 
>only but not new ones like ffG53a6,etc. Thanks

  I think the AMBER tools antechamber will be helpful.

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