[gmx-users] Lennard-Jones 9-6 potential problems
zhangjianguo2002
zhangjianguo2002 at 126.com
Tue May 26 09:06:10 CEST 2009
Hi everyone!
Have anyone used the Lennard-Jones 9-6 potential for coarse-grained models? when I use it, I get a very different result from that is got from the same Lennard-Jones 9-6 potential formed a potential table,the latter's results are comparable to the experiments. when I use LJ-9-6 potential,the ITP file is as following:
[ defaults ]
; nbfunc comb-rule gen-pairs fudgeLJ fudgeQQ
1 1 no 1.0 1.0 9
[ atomtypes ]
; name bond_type mass charge ptype sigma epsilon
opls_001 Cx 6 78.0190 0 A 0.505 2.95;
[ moleculetype ]
; Name nrexcl
Phenyl 1
[ atoms ]
; nr type resnr resid atom cgnr charge mass
1 opls_001 1 Phenyl C1 1 0.000 78.0190
other files ,such as mdp file and top file ,are all the same as normal LJ-12-6 potential, are these correct if I want to use LJ-9-6 potential? Do I still need to change something? Thanks very much for your kindness!
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