[gmx-users] membrane protein simulation

Samik Bhattacharya samikbhat at yahoo.co.in
Fri May 29 13:16:28 CEST 2009

hi  i'm new to gromacs and want to simulate a protein inside a phospholipid envelop (may be box or dodecahedron). for this i got the pdb files of both the proteins and the lipids(e.g.POPC, POPE etc). but i'm facing a lot of problems in generating the topology files as well as in running grompp as gromacs does not support lipids. i also tested it by using the lipid.itp file in the top directory. can anyone suggest me any tutorial where i can find detailed discussion on this matter? and obviously some help in how to go for it??
Thanking you in advance

      Explore your hobbies and interests. Go to http://in.promos.yahoo.com/groups/
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20090529/1d4b7420/attachment.html>

More information about the gromacs.org_gmx-users mailing list