[gmx-users] grompp

[Justin A. Lemkul]

leila karami wrote:
> dear justin
> 
> I use amber force field in gromacs.can this subject make such error :
> 
> Atom index (1) in settles out of bounds (1-0).
> This probably means that you have inserted topology section "settles" in 
> a part belonging to a different molecule than you intended to.
> In that case move the "settles" section to the right molecule.
>  

Did you read the solution I posted before?  You have #included your water .itp 
file in the wrong place.

-Justin

>  
> 
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-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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