November 2009 Archives by thread

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Starting: Sun Nov 1 07:38:38 CET 2009
Ending: Mon Nov 30 23:38:33 CET 2009
Messages: 725

• [gmx-users] Adsorption energy of a single molecule   Darrell Koskinen
  • [gmx-users] Adsorption energy of a single molecule   Justin A. Lemkul
• [gmx-users] Lennard Jones Parameters for Ammonia in ffoplsaa   Darrell Koskinen
  • [gmx-users] Lennard Jones Parameters for Ammonia in ffoplsaa   Mark Abraham
• [gmx-users] S-type Hydrogen bond correlation function   Ramachandran G
  • [gmx-users] S-type Hydrogen bond correlation function   David van der Spoel
    • [gmx-users] S-type Hydrogen bond correlation function   Ramachandran G
    • [gmx-users] S-type Hydrogen bond correlation function   Ramachandran G
      • [gmx-users] S-type Hydrogen bond correlation function   Mark Abraham
      • [gmx-users] S-type Hydrogen bond correlation function   Ramachandran G
      • [gmx-users] S-type Hydrogen bond correlation function   Mark Abraham
      • [gmx-users] S-type Hydrogen bond correlation function   Ramachandran G
      • [gmx-users] S-type Hydrogen bond correlation function   Mark Abraham
• [gmx-users] gmx user   pawan raghav
  • [gmx-users] gmx user   Mark Abraham
• [gmx-users] Fw: help for installing gromacs with cpmd   Farzad Molani
  • [gmx-users] Fw: help for installing gromacs with cpmd   Mark Abraham
    • [gmx-users] Fw: help for installing gromacs with cpmd   Farzad Molani
      • [gmx-users] Fw: help for installing gromacs with cpmd   Mark Abraham
      • [gmx-users] Fw: help for installing gromacs with cpmd   Farzad Molani
• [gmx-users] PMF and Gromacs 4   Rebeca García Fandiño
  • [gmx-users] PMF and Gromacs 4   Justin A. Lemkul
• [gmx-users] conf.gro file   leila karami
  • [gmx-users] conf.gro file   Justin A. Lemkul
• [gmx-users] Is anyone also using lammps?s   Peng Yi
  • [gmx-users] Is anyone also using lammps?s   David van der Spoel
    • [gmx-users] Is anyone also using lammps?s   Peng Yi
      • [gmx-users] Is anyone also using lammps?s   David van der Spoel
      • [gmx-users] Is anyone also using lammps?s   Peng Yi
      • [gmx-users] Is anyone also using lammps?s   Ran Friedman
      • [gmx-users] Is anyone also using lammps?s   Peng Yi
      • [gmx-users] Is anyone also using lammps?s   Ran Friedman
      • [gmx-users] Is anyone also using lammps?s   Peng Yi
      • [gmx-users] Is anyone also using lammps?s   Ran Friedman
• Fwd: Fwd: [gmx-users] scripts to generate topology CG   Francesco Pietra
  • Fwd: Fwd: [gmx-users] scripts to generate topology CG   Justin A. Lemkul
• [gmx-users] Quick question about g_mindist   ms
  • [gmx-users] Quick question about g_mindist   Justin A. Lemkul
    • [gmx-users] Quick question about g_mindist   ms
• [gmx-users] Modify disre_fc during md   Andrei Istrate
  • [gmx-users] Modify disre_fc during md   Mark Abraham
• [gmx-users] searching mailing lists other than gmx-users   Mark Abraham
  • [gmx-users] searching mailing lists other than gmx-users   Rossen Apostolov
• [gmx-users] Adsorption energy of a single molecule   Darrell Koskinen
  • [gmx-users] Adsorption energy of a single molecule   Justin A. Lemkul
  • [gmx-users] Adsorption energy of a single molecule   Mark Abraham
• [gmx-users] MVAPICH2 mdrun problem for SD and MD, GROMACS 4.0.5   Daniel Adriano Silva M
  • [gmx-users] MVAPICH2 mdrun problem for SD and MD, GROMACS 4.0.5   Mark Abraham
    • [gmx-users] trjcat xtc files   Paymon Pirzadeh
      • [gmx-users] trjcat xtc files   Mark Abraham
      • [gmx-users] trjcat xtc files   Paymon Pirzadeh
      • [gmx-users] trjcat xtc files   Mark Abraham
      • [gmx-users] trjcat xtc files   Payman Pirzadeh
      • [gmx-users] trjcat xtc files   TJ Piggot
      • [gmx-users] trjcat xtc files   Paymon Pirzadeh
      • [gmx-users] trjcat xtc files   XAvier Periole
      • [gmx-users] trjcat xtc files   Paymon Pirzadeh
      • [gmx-users] trjcat xtc files   Justin A. Lemkul
• [gmx-users] Lennard Jones Parameters for Ammonia in ffoplsaa   Darrell Koskinen
• [gmx-users] Adsorption energy of a single molecule   Darrell Koskinen
  • [gmx-users] Adsorption energy of a single molecule   Justin A. Lemkul
• [gmx-users] No default Proper Dih. types   vivek modi
  • [gmx-users] pressure coupled systems explode   aherz
• [gmx-users] normal mode analysis   abhijit kayal
• [gmx-users] Modify disre_fc during md   Andrei Istrate
  • [gmx-users] Modify disre_fc during md   Mark Abraham
• [gmx-users] EM with inflategro   sunny mishra
  • [gmx-users] EM with inflategro   Justin A. Lemkul
    • [gmx-users] EM with inflategro   sunny mishra
      • [gmx-users] EM with inflategro   Justin A. Lemkul
• [gmx-users] How to get centre of mass bond & angle distribution   jagannath mondal
• [gmx-users] Re: Requesting Help   XAvier Periole
• [gmx-users] grompp   leila karami
  • [gmx-users] grompp   leila karami
  • [gmx-users] grompp   Justin A. Lemkul
• [gmx-users] empty edr and trr file   Ildiko Harsanyi
• [gmx-users] g_sas with pbc   andrea carotti
  • [gmx-users] g_sas with pbc   David van der Spoel
• [gmx-users] gmx user   pawan raghav
  • [gmx-users] gmx user   Justin A. Lemkul
• [gmx-users] grompp   leila karami
  • [gmx-users] grompp   Justin A. Lemkul
• [gmx-users] Fatal error: Atom O in residue CCMT 1 not found in rtp entry with 38 atoms while sorting atoms   Chandan Choudhury
  • [gmx-users] Fatal error: Atom O in residue CCMT 1 not found in rtp entry with 38 atoms while sorting atoms   Mark Abraham
    • [gmx-users] Fatal error: Atom O in residue CCMT 1 not found in rtp entry with 38 atoms while sorting atoms   Chandan Choudhury
      • [gmx-users] Fatal error: Atom O in residue CCMT 1 not found in rtp entry with 38 atoms while sorting atoms   Mark Abraham
      • [gmx-users] Fatal error: Atom O in residue CCMT 1 not found in rtp entry with 38 atoms while sorting atoms   Justin A. Lemkul
• [gmx-users] grompp   leila karami
  • [gmx-users] grompp   Justin A. Lemkul
  • [gmx-users] grompp   Erik Marklund
• [gmx-users] Hello   pawan raghav
  • [gmx-users] Hello   Justin A. Lemkul
• [gmx-users] Re: trjcat -demux problem   Justin A. Lemkul
• [gmx-users] Fwd: Re: Inflategro for Coarse Grained   Thomas Schmidt
• [gmx-users] try to restart a md run using cpt file   Thielges, Sabine
  • [gmx-users] try to restart a md run using cpt file   Justin A. Lemkul
  • [gmx-users] try to restart a md run using cpt file   Paymon Pirzadeh
    • [gmx-users] try to restart a md run using cpt file   Justin A. Lemkul
• [gmx-users] Re: trjcat -demux problem   Jianhui Tian
• [gmx-users] g_angle between center of mass of three groups   jagannath mondal
  • [gmx-users] g_angle between center of mass of three groups   Mark Abraham
    • [gmx-users] g_angle between center of mass of three groups   jagannath mondal
      • [gmx-users] g_angle between center of mass of three groups   Berk Hess
• [gmx-users] How to tune number of CPUs for a run?   Pablo Englebienne
  • [gmx-users] How to tune number of CPUs for a run?   Carsten Kutzner
• [gmx-users] Determining types for GROMOS96 force field   Omololu Akin-Ojo
  • [gmx-users] Determining types for GROMOS96 force field   Justin A. Lemkul
    • [gmx-users] Determining types for GROMOS96 force field   Omololu Akin-Ojo
• [gmx-users] Different bonding energies for two almost the same systems   Reza Salari
  • [gmx-users] Different bonding energies for two almost the same systems   Mark Abraham
    • [gmx-users] Different bonding energies for two almost the same systems   Reza Salari
• [gmx-users] options in mdp for PMF   Rebeca García Fandiño
  • [gmx-users] options in mdp for PMF   Justin A. Lemkul
• [gmx-users] pdb2gmx and virtual sites   Ondrej Marsalek
  • [gmx-users] pdb2gmx and virtual sites   Justin A. Lemkul
    • [gmx-users] pdb2gmx and virtual sites   Ondrej Marsalek
      • [gmx-users] pdb2gmx and virtual sites   Justin A. Lemkul
      • [gmx-users] pdb2gmx and virtual sites   Ondrej Marsalek
      • [gmx-users] pdb2gmx and virtual sites   Justin A. Lemkul
      • [gmx-users] pdb2gmx and virtual sites   Ondrej Marsalek
      • [gmx-users] pdb2gmx and virtual sites   Ondrej Marsalek
      • [gmx-users] pdb2gmx and virtual sites   Justin A. Lemkul
• [gmx-users] Setting up an infinitely hard wall   Amit Choubey
  • [gmx-users] Setting up an infinitely hard wall   Berk Hess
• [gmx-users] MPI_BCAST : Message truncated [when restarting from checkpoint]   Vasilii Artyukhov
  • [gmx-users] MPI_BCAST : Message truncated [when restarting from checkpoint]   Mark Abraham
    • [gmx-users] MPI_BCAST : Message truncated [when restarting from checkpoint]   Berk Hess
      • [gmx-users] MPI_BCAST : Message truncated [when restarting from checkpoint]   Vasilii Artyukhov
      • [gmx-users] MPI_BCAST : Message truncated [when restarting from checkpoint]   Vasilii Artyukhov
• [gmx-users] Andersen Barostat   David Wright
  • [gmx-users] Andersen Barostat   Justin A. Lemkul
• [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   maria goranovic
  • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
    • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   maria goranovic
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   maria goranovic
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   Justin A. Lemkul
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   maria goranovic
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   maria goranovic
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   maria goranovic
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   maria goranovic
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   maria goranovic
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   Ran Friedman
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   Tsjerk Wassenaar
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   Ran Friedman
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   Tsjerk Wassenaar
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   maria goranovic
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   Tsjerk Wassenaar
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   maria goranovic
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   maria goranovic
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   maria goranovic
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   XAvier Periole
      • [gmx-users] Martini simulation problem in recentering trajectory so that the bilayer is at the center   Tsjerk Wassenaar
• [gmx-users] Freeze groups, energy group exclusions and partially frozen dihedrals   Jennifer Williams
  • [gmx-users] Freeze groups, energy group exclusions and partially frozen dihedrals   Mark Abraham
• [gmx-users] A simple XVG viewer   Michael Lerner
  • [gmx-users] A simple XVG viewer   Erik Marklund
    • [gmx-users] A simple XVG viewer   Michael Lerner
      • [gmx-users] A simple XVG viewer   Tsjerk Wassenaar
      • [gmx-users] A simple XVG viewer   Michael Lerner
      • [gmx-users] A simple XVG viewer   Tsjerk Wassenaar
• [gmx-users] creating a large bilayer   Adwait Mevada
  • [gmx-users] creating a large bilayer   Justin A. Lemkul
• [gmx-users] Re: Andersen Barostat   Michael Shirts
• [gmx-users] Sphingomyelin topologies to GROMACS   Guilherme Menegon Giesel
  • [gmx-users] Sphingomyelin topologies to GROMACS   Justin A. Lemkul
    • [gmx-users] Sphingomyelin topologies to GROMACS   Guilherme Menegon Giesel
• [gmx-users] Determination of heat capacity of water at constant pressure   Lum Nforbi
  • [gmx-users] Determination of heat capacity of water at constant pressure   Justin A. Lemkul
    • [gmx-users] Determination of heat capacity of water at constant pressure   David van der Spoel
• [gmx-users] Problem with running local pressure routine under Gromacs 3.0.2   George Khelashvili
• [gmx-users] Determination of heat capacity of water   Giulio Scocchi
• [gmx-users] Determining density of a gas in a simulation   Darrell Koskinen
  • [gmx-users] Determining density of a gas in a simulation   Mark Abraham
• [gmx-users] empty edr and trr file   Ildiko Harsanyi
• [gmx-users] g_rmsf calculation   Moutusi Manna
  • [gmx-users] g_rmsf calculation   Justin A. Lemkul
    • [gmx-users] g_rmsf calculation   Tsjerk Wassenaar
• [gmx-users] Truncation of file traj.trr failed   ram bio
  • [gmx-users] Truncation of file traj.trr failed   Justin A. Lemkul
    • [gmx-users] Truncation of file traj.trr failed   ram bio
      • [gmx-users] Truncation of file traj.trr failed   ram bio
      • [gmx-users] Truncation of file traj.trr failed   Justin A. Lemkul
      • [gmx-users] Truncation of file traj.trr failed   ram bio
      • [gmx-users] Truncation of file traj.trr failed   Justin A. Lemkul
• [gmx-users] parallel run stops writing in output files   elena.mol at mail.com
  • [gmx-users] parallel run stops writing in output files   Mark Abraham
• [gmx-users] gromacs 4.0 parallelization   milad ekramnia
  • [gmx-users] gromacs 4.0 parallelization   Justin A. Lemkul
  • [gmx-users] gromacs 4.0 parallelization   Mark Abraham
• [gmx-users] Determining density of a gas in a simulation   Darrell Koskinen
  • [gmx-users] Determining density of a gas in a simulation   Mark Abraham
• [gmx-users] Problem with simulation of aromatic structures in methanol   radhika jaswal
  • [gmx-users] Problem with simulation of aromatic structures in methanol   Mark Abraham
    • [gmx-users] Problem with simulation of aromatic structures in methanol   Mark Abraham
• [gmx-users] Re : Gromacs 4.0 parallelization   milad ekramnia
  • [gmx-users] Re : Gromacs 4.0 parallelization   Itamar Kass
    • [gmx-users] Re : Gromacs 4.0 parallelization   Mark Abraham
• [gmx-users] calculating local pressure   Amit Choubey
  • [gmx-users] g_bundle to calculate angle with z-axis   Sarah Witzke
    • SV: [gmx-users] g_bundle to calculate angle with z-axis   Sarah Witzke
• [gmx-users] topolbuild   Gunnar Widtfeldt Reginsson
  • [gmx-users] topolbuild   Justin A. Lemkul
    • [gmx-users] topolbuild   Gunnar Widtfeldt Reginsson
• [gmx-users] Problem with topolbuild   Gunnar Widtfeldt Reginsson
  • [gmx-users] Problem with topolbuild   Bruce D. Ray
    • [gmx-users] Problem with topolbuild   Gunnar Widtfeldt Reginsson
      • [gmx-users] Problem with topolbuild   Bruce D. Ray
      • [gmx-users] Problem with topolbuild   Gunnar Widtfeldt Reginsson
• [gmx-users] Re: gromacs 4.0 parallelization   milad ekramnia
  • [gmx-users] Re: gromacs 4.0 parallelization   Justin A. Lemkul
    • [gmx-users] Re: gromacs 4.0 parallelization   Justin A. Lemkul
• [gmx-users] g_energy   Arik Cohen
  • [gmx-users] g_energy   Mark Abraham
    • [gmx-users] g_energy   Arie Cohen
    • [gmx-users] g_energy   Arik Cohen
• [gmx-users] Is pressure coupling required in a simulation?   Darrell Koskinen
  • [gmx-users] Is pressure coupling required in a simulation?   Mark Abraham
• [gmx-users] Can not find forcefield for atom C4-1 with 0 bonds   Darrell Koskinen
  • [gmx-users] Can not find forcefield for atom C4-1 with 0 bonds   Justin A. Lemkul
• [gmx-users] converting all-atom pdb to cg.pdb   Francesco Pietra
  • [gmx-users] converting all-atom pdb to cg.pdb   Justin A. Lemkul
    • [gmx-users] converting all-atom pdb to cg.pdb   Francesco Pietra
      • [gmx-users] converting all-atom pdb to cg.pdb   Justin A. Lemkul
      • [gmx-users] converting all-atom pdb to cg.pdb   Mark Abraham
• [gmx-users] Free energy calculations   jorge_quintero at ciencias.uis.edu.co
  • [gmx-users] Free energy calculations   Michael Shirts
• [gmx-users] MD with bilayer   parthiban at ncbs.res.in
  • [gmx-users] MD with bilayer   Mark Abraham
    • [gmx-users] MD with bilayer   Itamar Kass
• [gmx-users] Missing H from residue   Jack Shultz
  • [gmx-users] Missing H from residue   Mark Abraham
    • [gmx-users] Missing H from residue   Jack Shultz
      • [gmx-users] Missing H from residue   Mark Abraham
      • [gmx-users] Missing H from residue   Jack Shultz
      • [gmx-users] Missing H from residue   Justin A. Lemkul
      • [gmx-users] Missing H from residue   Jack Shultz
      • [gmx-users] Missing H from residue   Justin A. Lemkul
      • [gmx-users] Missing H from residue   Jack Shultz
      • [gmx-users] Missing H from residue   Mark Abraham
  • [gmx-users] Missing H from residue   Justin A. Lemkul
• [gmx-users] Please tell me how to simulate two structures together in a water box   radhika jaswal
  • [gmx-users] Please tell me how to simulate two structures together in a water box   Mark Abraham
• [gmx-users] (no subject)   pawan raghav
  • [gmx-users] (no subject)   Mark Abraham
• [gmx-users] topology file in .dat format   subarna thakur
  • [gmx-users] topology file in .dat format   Tsjerk Wassenaar
• [gmx-users] Re: gmx-users Digest, Vol 67, Issue 60   pawan raghav
  • [gmx-users] Re: gmx-users Digest, Vol 67, Issue 60   Mark Abraham
• [gmx-users] Re: Installation on Windows   Tsjerk Wassenaar
• [gmx-users] LJ scaling and EnerPress correction   Antonia V.
  • [gmx-users] LJ scaling and EnerPress correction   Mark Abraham
    • [gmx-users] LJ scaling and EnerPress correction   Antonia V.
      • [gmx-users] LJ scaling and EnerPress correction   Mark Abraham
• [gmx-users] Increase temperature to 550K   Chih-Ying Lin
  • [gmx-users] Increase temperature to 550K   Justin A. Lemkul
• [gmx-users] g_sdf gives wrong refmol with multiple center molecules   Rasmus "Termo" Lundsgaard
  • [gmx-users] g_sdf gives wrong refmol with multiple center molecules   Ondrej Marsalek
• [gmx-users] Dummy masses for the Amber FF   Ondrej Marsalek
• [gmx-users] Charge group moving too much   Jennifer Williams
  • [gmx-users] Charge group moving too much   Mark Abraham
• [gmx-users] Remove solvent from results   Jack Shultz
  • [gmx-users] Re: Remove solvent from results   Jack Shultz
    • [gmx-users] Re: Remove solvent from results   Justin A. Lemkul
• [gmx-users] Increase temperature to 550K   Chih-Ying Lin
  • [gmx-users] Increase temperature to 550K   Justin A. Lemkul
• [gmx-users] Re: Walls In Gromacs   Amit Choubey
• [gmx-users] Re: Charge group moving too much   Vitaly V. Chaban
• [gmx-users] Re: Increase temperature to 550K   Vitaly V. Chaban
  • [gmx-users] Re: Increase temperature to 550K   Mark Abraham
• [gmx-users] Re: Increase temperature to 550K   Vitaly V. Chaban
• [gmx-users] Increase temperature to 550K   Chih-Ying Lin
  • [gmx-users] Increase temperature to 550K   Justin A. Lemkul
• [gmx-users] doing exact continuation   Amit Choubey
  • [gmx-users] doing exact continuation   Mark Abraham
• [gmx-users] How to generate xvg files   Jack Shultz
  • [gmx-users] How to generate xvg files   Amit Choubey
    • [gmx-users] How to generate xvg files   Jack Shultz
      • [gmx-users] How to generate xvg files   Amit Choubey
      • [gmx-users] How to generate xvg files   Jack Shultz
      • [gmx-users] How to generate xvg files   Mark Abraham
      • [gmx-users] How to generate xvg files   Amit Choubey
  • [gmx-users] How to generate xvg files   Justin A. Lemkul
• [gmx-users] solvation energy calculation   Itamar Kass
• [gmx-users] Does Gromacs support CHARMM force field now?   xuji
  • [gmx-users] Does Gromacs support CHARMM force field now?   Justin A. Lemkul
• [gmx-users] pdb2gmx -missing   leila karami
  • [gmx-users] pdb2gmx -missing   Itamar Kass
    • [gmx-users] pdb2gmx -missing   Tsjerk Wassenaar
      • [gmx-users] pdb2gmx -missing   Itamar Kass
• [gmx-users] energy minimization - not converge   leila karami
  • [gmx-users] energy minimization - not converge   Tsjerk Wassenaar
  • [gmx-users] energy minimization - not converge   Mark Abraham
• [gmx-users] RE: Does Gromacs support CHARMM force field now?   Pär Bjelkmar
  • [gmx-users] RE: Does Gromacs support CHARMM force field now?   Mark Abraham
• [gmx-users] Increase temperature to 550K   Chih-Ying Lin
  • [gmx-users] Increase temperature to 550K   Justin A. Lemkul
• [gmx-users] Increase temperature to 550K => simulation techniques ?   Chih-Ying Lin
  • [gmx-users] Increase temperature to 550K => simulation techniques ?   Mark Abraham
• [gmx-users] Constraints & Restraints   darrellk at ece.ubc.ca
  • [gmx-users] Constraints & Restraints   Justin A. Lemkul
  • [gmx-users] Constraints & Restraints   Tsjerk Wassenaar
• [gmx-users] force field: heme group   Ramachandran G
  • [gmx-users] force field: heme group   Erik Marklund
  • [gmx-users] force field: heme group   Justin A. Lemkul
    • [gmx-users] force field: heme group   Matthew L. Danielson
      • [gmx-users] force field: heme group   Justin A. Lemkul
• [gmx-users] Constraints & Restraints   Darrell Koskinen
  • [gmx-users] Constraints & Restraints   Mark Abraham
    • [gmx-users] Constraints & Restraints   Erik Marklund
      • [gmx-users] Constraints & Restraints   Ran Friedman
• [gmx-users] Docking with PyMol and using Gromacs   Gunnar Widtfeldt Reginsson
  • [gmx-users] Docking with PyMol and using Gromacs   Justin A. Lemkul
    • [gmx-users] Docking with PyMol and using Gromacs   Mark Abraham
  • [gmx-users] Docking with PyMol and using Gromacs   Dallas B. Warren
    • [gmx-users] Docking with PyMol and using Gromacs   Nicolas Sapay
      • [gmx-users] Docking with PyMol and using Gromacs   Ran Friedman
      • [gmx-users] Docking with PyMol and using Gromacs   Gunnar Widtfeldt Reginsson
• [gmx-users] Adsorption energy of a single molecule   Darrell Koskinen
  • [gmx-users] Adsorption energy of a single molecule   Justin A. Lemkul
  • [gmx-users] Adsorption energy of a single molecule   Mark Abraham
• [gmx-users] membrane protein tutorial information   irene farabella
• [gmx-users] Hydrogen bond occupancy for the dimer of Acetic Acid   Rasmus "Termo" Lundsgaard
  • [gmx-users] Hydrogen bond occupancy for the dimer of Acetic Acid   Ran Friedman
    • [gmx-users] Hydrogen bond occupancy for the dimer of Acetic Acid   Rasmus "Termo" Lundsgaard
      • [gmx-users] Hydrogen bond occupancy for the dimer of Acetic Acid   Ran Friedman
• [gmx-users] Density histogram in Ramachandran plot   ms
  • [gmx-users] Density histogram in Ramachandran plot   Mark Abraham
    • [gmx-users] Density histogram in Ramachandran plot   Anthony Cruz Balberdi
• [gmx-users] free energy calculation using TI   Zhale Ghaemi
• [gmx-users] Constraints & Restraints   Darrell Koskinen
  • [gmx-users] Constraints & Restraints   Justin A. Lemkul
• [gmx-users] Adsorption energy of a single molecule   Darrell Koskinen
  • [gmx-users] Adsorption energy of a single molecule   Mark Abraham
• [gmx-users] Generate an Index File   Jack Shultz
  • [gmx-users] Generate an Index File   Mark Abraham
  • [gmx-users] Generate an Index File   Justin A. Lemkul
• [gmx-users] About rotational restraint   Lee Soin
• [gmx-users] Can not open file; traj.trr   Yi Peng
  • [gmx-users] Can not open file; traj.trr   Justin A. Lemkul
  • [gmx-users] Can not open file; traj.trr   Amit Choubey
    • [gmx-users] Can not open file; traj.trr   Yi Peng
• [gmx-users] Segmentation fault while running MD simulation   rainy908 at yahoo.com
  • [gmx-users] Segmentation fault while running MD simulation   Justin A. Lemkul
    • [gmx-users] Segmentation fault while running MD simulation   rainy908 at yahoo.com
      • [gmx-users] Segmentation fault while running MD simulation   Justin A. Lemkul
  • [gmx-users] Segmentation fault while running MD simulation   Mark Abraham
    • [gmx-users] Segmentation fault while running MD simulation   rainy908 at yahoo.com
      • [gmx-users] Segmentation fault while running MD simulation   Justin A. Lemkul
      • [gmx-users] Segmentation fault while running MD simulation   Amit Choubey
      • [gmx-users] Segmentation fault while running MD simulation   rainy908 at yahoo.com
      • [gmx-users] Segmentation fault while running MD simulation   Justin A. Lemkul
• [gmx-users] Invoking parameters at startup   Jack Shultz
  • [gmx-users] Invoking parameters at startup   Justin A. Lemkul
    • [gmx-users] Invoking parameters at startup   Jack Shultz
• [gmx-users] access code for qmmm   Farzad Molani
  • [gmx-users] access code for qmmm   Mark Abraham
  • [gmx-users] access code for qmmm   ilona.baldus at bioquant.uni-heidelberg.de
    • [gmx-users] access code for qmmm   Farzad Molani
      • [gmx-users] access code for qmmm   Kukol, Andreas
    • [gmx-users] access code for qmmm   Farzad Molani
      • [gmx-users] access code for qmmm   ilona.baldus at bioquant.uni-heidelberg.de
      • [gmx-users] access code for qmmm   Farzad Molani
      • [gmx-users] access code for qmmm   Mark Abraham
      • [gmx-users] access code for qmmm   Farzad Molani
• [gmx-users] mdrun   leila karami
• [gmx-users] pull code with defined negative relative displacements   chris.neale at utoronto.ca
  • [gmx-users] pull code with defined negative relative displacements   Berk Hess
    • [gmx-users] pull code with defined negative relative displacements   Justin A. Lemkul
• [gmx-users] mdrun   chris.neale at utoronto.ca
• [gmx-users] About rotational restraint   chris.neale at utoronto.ca
• [gmx-users] mdrun   leila karami
  • [gmx-users] mdrun   Justin A. Lemkul
• [gmx-users] Handling modified residue   Jiang Zhu
  • [gmx-users] Handling modified residue   J. Rui Rodrigues
  • [gmx-users] Handling modified residue   Amit Choubey
• [gmx-users] Solvation Free energy using Amber   jorge_quintero at ciencias.uis.edu.co
  • [gmx-users] Solvation Free energy using Amber   Justin A. Lemkul
    • [gmx-users] Solvation Free energy using Amber   jorge_quintero at ciencias.uis.edu.co
      • [gmx-users] Solvation Free energy using Amber   Justin A. Lemkul
      • [gmx-users] Solvation Free energy using Amber   jorge_quintero at ciencias.uis.edu.co
      • [gmx-users] Solvation Free energy using Amber   Justin A. Lemkul
• [gmx-users] pull code with defined negative relative displacements   chris.neale at utoronto.ca
  • [gmx-users] pull code with defined negative relative displacements   Berk Hess
    • [gmx-users] pull code with defined negative relative displacements   Berk Hess
• [gmx-users] Solvation Free energy using Amber   Justin A. Lemkul
  • [gmx-users] Solvation Free energy using Amber   jorge_quintero at ciencias.uis.edu.co
• [gmx-users] system blowing   Ramachandran G
  • [gmx-users] system blowing   Mark Abraham
• [gmx-users] genion   leila karami
  • [gmx-users] genion   Mark Abraham
  • [gmx-users] genion   Justin A. Lemkul
• [gmx-users] genion   leila karami
• [gmx-users] pull code with defined negative relative displacements   chris.neale at utoronto.ca
• [gmx-users] PULLING   Алексей Раевский
• [gmx-users] pull code with defined negative relative displacements   chris.neale at utoronto.ca
  • [gmx-users] pull code with defined negative relative displacements   Berk Hess
• [gmx-users] pull code with defined negative relative displacements   chris.neale at utoronto.ca
  • [gmx-users] pull code with defined negative relative displacements   Berk Hess
• [gmx-users] PULLING   chris.neale at utoronto.ca
• [gmx-users] ull code with defined negative relative displacements   chris.neale at utoronto.ca
  • [gmx-users] ull code with defined negative relative displacements   Berk Hess
• [gmx-users] PULLING   Алексей Раевский
• [gmx-users] PULLING   Алексей Раевский
  • [gmx-users] PULLING   Justin A. Lemkul
• [gmx-users] Re: gmx-users Digest, Vol 67, Issue 89   Алексей Раевский
• [gmx-users] g_covar ends up complaining from a Segmentation Fault   Peyman Yamin
  • [gmx-users] g_covar ends up complaining from a Segmentation Fault   Justin A. Lemkul
• [gmx-users] PULLING   chris.neale at utoronto.ca
• [gmx-users] Segfaults with trjconv and g_dist   Ondrej Marsalek
  • [gmx-users] Re: Segfaults with trjconv and g_dist   Ondrej Marsalek
  • [gmx-users] Segfaults with trjconv and g_dist   Tsjerk Wassenaar
    • [gmx-users] Segfaults with trjconv and g_dist   Ondrej Marsalek
      • [gmx-users] Segfaults with trjconv and g_dist   Tsjerk Wassenaar
      • [gmx-users] Segfaults with trjconv and g_dist   Ondrej Marsalek
      • [gmx-users] Segfaults with trjconv and g_dist   Ondrej Marsalek
• [gmx-users] Free Energy Perturbation plot: symmetry breaking?   Matteo De Chiara
• [gmx-users] Problem with system minimization   Lum Nforbi
  • [gmx-users] Problem with system minimization   Justin A. Lemkul
• [gmx-users] Adding ions   Arden Perkins
  • [gmx-users] Adding ions   Justin A. Lemkul
  • [gmx-users] Adding ions   Andrea Muntean
  • [gmx-users] Adding ions   Amir Marcovitz
• [gmx-users] pdb2gmx : treat CL as C   Nilesh Dhumal
  • [gmx-users] pdb2gmx : treat CL as C   Chandan Choudhury
  • [gmx-users] pdb2gmx : treat CL as C   Mark Abraham
    • [gmx-users] pdb2gmx : treat CL as C   Nilesh Dhumal
      • [gmx-users] pdb2gmx : treat CL as C   Manik Mayur
      • [gmx-users] pdb2gmx : treat CL as C   Mark Abraham
      • [gmx-users] pdb2gmx : treat CL as C   Nilesh Dhumal
      • [gmx-users] pdb2gmx : treat CL as C   Justin A. Lemkul
      • [gmx-users] pdb2gmx : treat CL as C   Tsjerk Wassenaar
      • [gmx-users] pdb2gmx : treat CL as C   Tsjerk Wassenaar
      • [gmx-users] pdb2gmx : treat CL as C   Nilesh Dhumal
      • [gmx-users] pdb2gmx : treat CL as C   Justin A. Lemkul
• [gmx-users] Calculating density of a particular run segment   Lum Nforbi
  • [gmx-users] Calculating density of a particular run segment   Mark Abraham
• [gmx-users] Urea Topology   karan syal
  • [gmx-users] Urea Topology   Justin A. Lemkul
    • [gmx-users] Urea Topology   TJ Piggot
• [gmx-users] Re: access code for qmmm (Farzad Molani)   Gerrit Groenhof
• [gmx-users] segmentation fault in g_anaeig   Nilu Chakrabarti
  • [gmx-users] segmentation fault in g_anaeig   Tsjerk Wassenaar
    • [gmx-users] segmentation fault in g_anaeig   Berk Hess
• [gmx-users] Tabulated non-bonded potential   ms
  • [gmx-users] Tabulated non-bonded potential   Mark Abraham
    • [gmx-users] Hydrogen bonding   Sarah Witzke
      • [gmx-users] Hydrogen bonding   Justin A. Lemkul
      • SV: [gmx-users] Hydrogen bonding   Sarah Witzke
      • SV: [gmx-users] Hydrogen bonding   Justin A. Lemkul
      • SV: SV: [gmx-users] Hydrogen bonding   Sarah Witzke
    • [gmx-users] Tabulated non-bonded potential   ms
    • [gmx-users] Tabulated non-bonded potential   ms
• [gmx-users] Decreasing MSD of ligand ?   Chih-Ying Lin
  • [gmx-users] Decreasing MSD of ligand ?   Justin A. Lemkul
  • [gmx-users] Decreasing MSD of ligand ?   Omer Markovitch
• [gmx-users] grompp error! why?   qing yang
  • [gmx-users] grompp error! why?   Justin A. Lemkul
    • [gmx-users] how to construct fatty acid   Tengfei Luo
      • [gmx-users] how to construct fatty acid   Justin A. Lemkul
      • [gmx-users] how to construct fatty acid   Tengfei Luo
      • [gmx-users] how to construct fatty acid   Justin A. Lemkul
      • [gmx-users] how to construct fatty acid   Tengfei Luo
      • [gmx-users] how to construct fatty acid   Justin A. Lemkul
      • [gmx-users] how to construct fatty acid   Tengfei Luo
  • [gmx-users] grompp error! why?   Erik Marklund
  • [gmx-users] grompp error! why?   Terry
• [gmx-users] vmd does not display the molecule   leila karami
  • [gmx-users] vmd does not display the molecule   Justin A. Lemkul
  • [gmx-users] vmd does not display the molecule   Nicolas Sapay
• [gmx-users] vmd does not display the molecule   leila karami
  • [gmx-users] vmd does not display the molecule   Justin A. Lemkul
• [gmx-users] vmd does not display the molecule   leila karami
  • [gmx-users] vmd does not display the molecule   Erik Marklund
    • [gmx-users] vmd does not display the molecule   Erik Marklund
  • [gmx-users] vmd does not display the molecule   Justin A. Lemkul
• [gmx-users] pull code with defined negative relative displacements   Chris Neale
  • [gmx-users] pull code with defined negative relative displacements   Berk Hess
• [gmx-users] constant_force pulling   Thomas Schlesier
  • [gmx-users] constant_force pulling   Berk Hess
• [gmx-users] Decreasing MSD of ligand ?   Chih-Ying Lin
  • [gmx-users] Decreasing MSD of ligand ?   Justin A. Lemkul
• SV: SV: [gmx-users] Hydrogen bonding   Justin A. Lemkul
  • SV: SV: SV: [gmx-users] Hydrogen bonding   Sarah Witzke
• SV: SV: SV: [gmx-users] Hydrogen bonding   Justin A. Lemkul
  • SV: SV: SV: [gmx-users] Hydrogen bonding   Sarah Witzke
    • SV: SV: SV: [gmx-users] Hydrogen bonding   Justin A. Lemkul
    • [gmx-users] g_saltbr   Sarah Witzke
      • [gmx-users] g_saltbr   Justin A. Lemkul
      • [gmx-users] g_saltbr   Sarah Witzke
• [gmx-users] Problem with box-type after the extension of simulation   sukesh chandra gain
  • [gmx-users] Problem with box-type after the extension of simulation   Amit Choubey
• [gmx-users] covariance   Morteza Khabiri
  • [gmx-users] covariance   Tsjerk Wassenaar
• [gmx-users] How to make carbon nanotube infinite?   Cun Zhang
  • [gmx-users] How to make carbon nanotube infinite?   Justin A. Lemkul
    • [gmx-users] How to make carbon nanotube infinite?   Cun Zhang
      • [gmx-users] How to make carbon nanotube infinite?   Justin A. Lemkul
      • [gmx-users] How to make carbon nanotube infinite?   Cun Zhang
      • [gmx-users] How to make carbon nanotube infinite?   Justin A. Lemkul
• [gmx-users] covariance   Morteza Khabiri
  • [gmx-users] covariance   Tsjerk Wassenaar
• [gmx-users] Force Fields   Smith, Chanel Chonda
  • [gmx-users] Force Fields   Justin A. Lemkul
• [gmx-users] Hydrated radius of ions   Manik Mayur
  • [gmx-users] Hydrated radius of ions   Dallas B. Warren
    • [gmx-users] Hydrated radius of ions   Manik Mayur
      • [gmx-users] Hydrated radius of ions   Dallas B. Warren
• [gmx-users] H-bonds in water + alcohol mixture   Nuno Garrido
• [gmx-users] FEP with bond formation, pair problem   Jochen Hub
  • [gmx-users] FEP with bond formation, pair problem   Berk Hess
    • [gmx-users] FEP with bond formation, pair problem   David van der Spoel
      • [gmx-users] FEP with bond formation, pair problem   Jochen Hub
• [gmx-users] Re: Force Fields   Vitaly V. Chaban
• [gmx-users] 6-31G** for Gromacs   ilona.baldus at bioquant.uni-heidelberg.de
  • [gmx-users] 6-31G** for Gromacs   Mark Abraham
• [gmx-users] Problem with Gromacs-CPMD   jorge_quintero at ciencias.uis.edu.co
• [gmx-users] How to check for bad contacts   Lum Nforbi
  • [gmx-users] How to check for bad contacts   Dallas B. Warren
• [gmx-users] User results for another run   Jack Shultz
  • [gmx-users] User results for another run   Justin A. Lemkul
  • [gmx-users] User results for another run   Dallas B. Warren
• [gmx-users] g_msd => The MSD and periodic boundary condition   Chih-Ying Lin
  • [gmx-users] g_msd => The MSD and periodic boundary condition   Justin A. Lemkul
  • [gmx-users] g_msd => The MSD and periodic boundary condition   Omer Markovitch
    • [gmx-users] g_msd => The MSD and periodic boundary condition   Lukasz Cwiklik
      • [gmx-users] g_msd => The MSD and periodic boundary condition   Tsjerk Wassenaar
• [gmx-users] how to make a porcupine plot?   AntonioLeung
  • [gmx-users] how to make a porcupine plot?   Justin A. Lemkul
• [gmx-users] when using RB dihedral function, how to exclude 1-4 vdw ?   XunJie Yang
• [gmx-users] when using RB dihedral function, how to exclude 1-4 vdw ?   XunJie Yang
  • [gmx-users] when using RB dihedral function, how to exclude 1-4 vdw ?   Mark Abraham
  • [gmx-users] when using RB dihedral function, how to exclude 1-4 vdw ?   TJ Piggot
• [gmx-users] Re: gmx-users Digest, Vol 67, Issue 110   Cun Zhang
  • [gmx-users] Re: gmx-users Digest, Vol 67, Issue 110 (How to make carbon nanotube infinite?)   Justin A. Lemkul
• [gmx-users] RE:How to check for bad contacts.   Lum Nforbi
  • [gmx-users] RE:How to check for bad contacts.   Justin A. Lemkul
  • [gmx-users] RE:How to check for bad contacts.   Mark Abraham
• [gmx-users] Disulfide bridge formation between A and B state   Jochen Hub
  • [gmx-users] Disulfide bridge formation between A and B state   Berk Hess
    • [gmx-users] Disulfide bridge formation between A and B state   Jochen Hub
• [gmx-users] Pushing MD further   Thielges, Sabine
  • [gmx-users] Pushing MD further   Justin A. Lemkul
    • [gmx-users] Pushing MD further   Berk Hess
      • [gmx-users] Pushing MD further   TJ Piggot
      • [gmx-users] Pushing MD further   mkubitz at gwdg.de
• [gmx-users] problems compiling gromacs 4.0.5 in Ubuntu 9.0.4   pedro alberto valiente flores
  • [gmx-users] problems compiling gromacs 4.0.5 in Ubuntu 9.0.4   Mark Abraham
  • [gmx-users] problems compiling gromacs 4.0.5 in Ubuntu 9.0.4   Yasuyuki Araki
• [gmx-users] gromacs with gaussian 09   ilona.baldus at bioquant.uni-heidelberg.de
• [gmx-users] How to calculate the block averaging error from non-equilibrium MD simulations   Yanmei Song
  • [gmx-users] How to calculate the block averaging error from non-equilibrium MD simulations   Justin A. Lemkul
    • [gmx-users] How to calculate the block averaging error from non-equilibrium MD simulations   Yanmei Song
      • [gmx-users] How to calculate the block averaging error from non-equilibrium MD simulations   Justin A. Lemkul
      • [gmx-users] How to calculate the block averaging error from non-equilibrium MD simulations   Yanmei Song
      • [gmx-users] How to calculate the block averaging error from non-equilibrium MD simulations   Justin A. Lemkul
• [gmx-users] error in converting charmm to gromacs   Chanchal
  • [gmx-users] error in converting charmm to gromacs   Justin A. Lemkul
  • [gmx-users] error in converting charmm to gromacs   Mark Abraham
    • [gmx-users] error in converting charmm to gromacs   Chanchal
      • [gmx-users] error in converting charmm to gromacs   Chanchal
• [gmx-users] amber force field in gromacs   leila karami
  • [gmx-users] amber force field in gromacs   Mark Abraham
  • [gmx-users] amber force field in gromacs   Bruce D. Ray
  • [gmx-users] amber force field in gromacs   Terry
  • [gmx-users] amber force field in gromacs   Terry
• [gmx-users] amber force field in gromacs   leila karami
  • [gmx-users] amber force field in gromacs   Mark Abraham
• [gmx-users] amber force field in gromacs   leila karami
  • [gmx-users] amber force field in gromacs   Justin A. Lemkul
• [gmx-users] Re: amber force field in gromacs   Alan
• [gmx-users] 4. Re: access code for qmmm (Mark Abraham)   Gerrit Groenhof
  • [gmx-users] 4. Re: access code for qmmm (Mark Abraham)   Farzad Molani
    • [gmx-users] 4. Re: access code for qmmm (Mark Abraham)   Mark Abraham
  • [gmx-users] 4. Re: access code for qmmm (Mark Abraham)   Farzad Molani
  • [gmx-users] 4. Re: access code for qmmm   Farzad Molani
    • [gmx-users] 4. Re: access code for qmmm   Justin A. Lemkul
• [gmx-users] Diffusion of Ammonia Gas   Darrell Koskinen
  • [gmx-users] Diffusion of Ammonia Gas   Mark Abraham
    • [gmx-users] Diffusion of Ammonia Gas   David van der Spoel
• [gmx-users] Creating index group of residues by vicinity to ligand   shayamra at post.tau.ac.il
  • [gmx-users] Creating index group of residues by vicinity to ligand   Mark Abraham
    • [gmx-users] Creating index group of residues by vicinity to ligand   shayamra at post.tau.ac.il
• [gmx-users] distance between two atoms   udi
  • [gmx-users] distance between two atoms   V Hariharan
• [gmx-users] how to obtain the hydrogen bond energy?   lammps lammps
  • [gmx-users] how to obtain the hydrogen bond energy?   lammps lammps
    • [gmx-users] how to obtain the hydrogen bond energy?   Mark Abraham
    • [gmx-users] how to obtain the hydrogen bond energy?   David van der Spoel
  • [gmx-users] how to obtain the hydrogen bond energy?   Omer Markovitch
• [gmx-users] Topology file error for a ligand   Anirban Ghosh
  • [gmx-users] Topology file error for a ligand   Mark Abraham
  • [gmx-users] Topology file error for a ligand   Justin A. Lemkul
    • [gmx-users] Topology file error for a ligand   Anirban Ghosh
      • [gmx-users] Topology file error for a ligand   Justin A. Lemkul
• [gmx-users] Can not determine precision of trn file   Yi Peng
  • [gmx-users] Can not determine precision of trn file   Mark Abraham
• [gmx-users] Normalization in g_rdf   Ondrej Marsalek
  • [gmx-users] Normalization in g_rdf   Berk Hess
    • [gmx-users] Normalization in g_rdf   Ondrej Marsalek
  • [gmx-users] Normalization in g_rdf   Omer Markovitch
    • [gmx-users] Normalization in g_rdf   Ondrej Marsalek
      • [gmx-users] Normalization in g_rdf   Berk Hess
      • [gmx-users] Normalization in g_rdf   Ondrej Marsalek
      • [gmx-users] Normalization in g_rdf   Berk Hess
      • [gmx-users] Normalization in g_rdf   Ondrej Marsalek
• [gmx-users] Group Cl not found in indexfile   SHANG Yuan
  • [gmx-users] Group Cl not found in indexfile   Justin A. Lemkul
• [gmx-users] Genbox   Lum Nforbi
  • [gmx-users] Genbox   Justin A. Lemkul
• [gmx-users] Coulomb Interactions   nishap.patel at utoronto.ca
  • [gmx-users] Coulomb Interactions   Mark Abraham
• [gmx-users] Continue simulation   Jack Shultz
  • [gmx-users] Continue simulation   Mark Abraham
  • [gmx-users] Continue simulation   Justin A. Lemkul
    • [gmx-users] Continue simulation   Jack Shultz
• [gmx-users] Re: How to make carbon nanotube infinite?   Cun Zhang
• [gmx-users] Re: How to make carbon nanotube infinite?   Justin A. Lemkul
  • [gmx-users] Re: How to make carbon nanotube infinite?   Justin A. Lemkul
• [gmx-users] Unexpected behavior of g_msd   Darrell Koskinen
  • [gmx-users] Unexpected behavior of g_msd   Tsjerk Wassenaar
• [gmx-users] hi   PAVAN RELISH DESTINY RESOLVING CRUX OF LIFE.........
  • [gmx-users] hi   Justin A. Lemkul
• [gmx-users] does editconf follow pdb rules?   Francesco Pietra
• [gmx-users] query regarding itp file   subarna thakur
  • [gmx-users] query regarding itp file   Kukol, Andreas
• [gmx-users] output of mdrun-openmm   HHEINDL at terra.es
• [gmx-users] Unexpected behavior of g_msd   Darrell Koskinen
  • [gmx-users] Unexpected behavior of g_msd   Dallas B. Warren
    • [gmx-users] Unexpected behavior of g_msd   Berk Hess
• [gmx-users] Does shell molecular exclude core shell electrostatics automatically   Shuangxing Dai
  • [gmx-users] Does shell molecular exclude core shell electrostatics automatically   David van der Spoel
• [gmx-users] Simulation at unrealistic temperatures   Neha Bharat Gajaria
  • [gmx-users] Simulation at unrealistic temperatures   Omer Markovitch
  • [gmx-users] Simulation at unrealistic temperatures   Jochen Hub
• [gmx-users] Buffer Overflow Problem on Ubuntu Linux   Venky Krishnamani
• [gmx-users] water molecule not settled.........   pavan payghan
  • [gmx-users] water molecule not settled.........   Jochen Hub
• [gmx-users] Unexpected behavior of g_msd   Darrell Koskinen
  • [gmx-users] Unexpected behavior of g_msd   Berk Hess
• [gmx-users] What is the current wisdom on energy leak?   ms
• [gmx-users] (no subject)   pawan raghav
  • [gmx-users] (no subject)   Itamar Kass
• [gmx-users] Unexpected behavior of g_msd   darrellk at ece.ubc.ca
  • [gmx-users] Unexpected behavior of g_msd   Berk Hess
• [gmx-users] domain decomposition errors   pedro alberto valiente flores
  • [gmx-users] domain decomposition errors   David van der Spoel
    • [gmx-users] domain decomposition errors   pedro alberto valiente flores
• [gmx-users] An unexpected behavior of rdf calculated by the g_rdf command   青 叶
  • [gmx-users] An unexpected behavior of rdf calculated by the g_rdf command   Lukasz Cwiklik
    • [gmx-users] An unexpected behavior of rdf calculated by the g_rdf command   青 叶
      • [gmx-users] An unexpected behavior of rdf calculated by the g_rdf command   Justin A. Lemkul
      • [gmx-users] An unexpected behavior of rdf calculated by the g_rdf command   青 叶
• [gmx-users] problem on make_ndx   AntonioLeung
  • [gmx-users] problem on make_ndx   Carsten Kutzner
• [gmx-users] problem on make_ndx   AntonioLeung
• [gmx-users] Tabulated potentials make newbies crazy   ms
  • [gmx-users] Tabulated potentials make newbies crazy   Mark Abraham
    • [gmx-users] Tabulated potentials make newbies crazy   ms
      • [gmx-users] Tabulated potentials make newbies crazy   Justin A. Lemkul
      • [gmx-users] Tabulated potentials make newbies crazy   Mark Abraham
      • [gmx-users] Tabulated potentials make newbies crazy   ms
      • [gmx-users] Tabulated potentials make newbies crazy   Mark Abraham
• [gmx-users] gmx-users Digest, memory allocation error   hema dhevi
  • [gmx-users] gmx-users Digest, memory allocation error   Justin A. Lemkul
    • Re: [gmx-users] gmx-users Digest, memory allocation error   hema dhevi
      • [gmx-users] gmx-users Digest, memory allocation error   Justin A. Lemkul
• [gmx-users] g_angle for calculating dihedrals   Amit Choubey
  • [gmx-users] g_angle for calculating dihedrals   David van der Spoel
• [gmx-users] gmx-users Digest, Vol 67, Issue 142   hema dhevi
• [gmx-users] united atom   Jamie Seyed
  • [gmx-users] united atom   Justin A. Lemkul
• [gmx-users] gromp error for gmxtest-4.0.4 and 3.3.3 on new gromacs-4.0.5 install   Yirdaw, Robel Birru
  • [gmx-users] gromp error for gmxtest-4.0.4 and 3.3.3 on new gromacs-4.0.5 install   Justin A. Lemkul
  • [gmx-users] gromp error for gmxtest-4.0.4 and 3.3.3 on new gromacs-4.0.5 install   Mark Abraham
• [gmx-users] Charge groups & Coulomb switch - artifacts in radial distribution function. Atom-based or group-based truncation?   Will Glover
  • [gmx-users] Charge groups & Coulomb switch - artifacts in radial distribution function. Atom-based or group-based truncation?   David van der Spoel
• [gmx-users] how can i coarse grained the protein atomic structure   nafiseh farhadian
  • [gmx-users] how can i coarse grained the protein atomic structure   Justin A. Lemkul
• [gmx-users] RMSD Vs Residue no by Grace   rituraj purohit
  • [gmx-users] RMSD Vs Residue no by Grace   Justin A. Lemkul
  • [gmx-users] RMSD Vs Residue no by Grace   Itamar Kass
• [gmx-users] free energy calculations using MBAR and gromacs   Gurpreet Singh
  • [gmx-users] free energy calculations using MBAR and gromacs   Michael Shirts
• [gmx-users] Gromacs with QMMM Support   Jack Shultz
  • [gmx-users] Gromacs with QMMM Support   ilona.baldus at bioquant.uni-heidelberg.de
    • [gmx-users] Gromacs with QMMM Support   Jack Shultz
• [gmx-users] NPT REMD   양창원 (Changwon Yang)
• [gmx-users] Re: How to make carbon nanotube infinite?   Cun Zhang
  • [gmx-users] Re: How to make carbon nanotube infinite?   Justin A. Lemkul
• [gmx-users] trjconv -pbc cluster with rhombic dodecahedron box   Daniel Parton
  • [gmx-users] trjconv -pbc cluster with rhombic dodecahedron box   Tsjerk Wassenaar
• [gmx-users] trjconv -pbc cluster with rhombic dodecahedron box   chris.neale at utoronto.ca
• [gmx-users] amber force field in Gromacs   servaas
  • [gmx-users] amber force field in Gromacs   Mark Abraham
• [gmx-users] Survey: 3 minutes of your time   Pieter van 't Hof
• [gmx-users] Survey: 3 minutes of your time   Pieter van 't Hof
• [gmx-users] Last step before CG em.mdp   Francesco Pietra
  • [gmx-users] Last step before CG em.mdp   Justin A. Lemkul
  • [gmx-users] Fwd: Last step before CG em.mdp   Francesco Pietra
    • [gmx-users] Fwd: Last step before CG em.mdp   Justin A. Lemkul
      • [gmx-users] Fwd: Last step before CG em.mdp   Francesco Pietra
      • [gmx-users] Fwd: Last step before CG em.mdp   Justin A. Lemkul
      • [gmx-users] Fwd: Last step before CG em.mdp   Justin A. Lemkul
• [gmx-users] Problem with output structures generated by energy minimization with GROMACS 4   HAO JIANG
  • [gmx-users] Problem with output structures generated by energy minimization with GROMACS 4   Tsjerk Wassenaar
    • [gmx-users] Problem with output structures generated by energy minimization with GROMACS 4   HAO JIANG
• [gmx-users] gromacs error   pawan raghav
  • [gmx-users] gromacs error   Justin A. Lemkul
• [gmx-users] trjconv -pbc cluster with rhombic dodecahedron box   Daniel Parton
  • [gmx-users] trjconv -pbc cluster with rhombic dodecahedron box   Tsjerk Wassenaar
• [gmx-users] Tensor of inertia moments at each time step   Egidijus Kuprusevicius
• [gmx-users] g_mindist , trajectory only CA atoms, to small values?   t.peter.Mueller at gmx.net
• [gmx-users] gromp error for gmxtest-4.0.4 and 3.3.3 on new gromacs-4.0.5 install   Mark Abraham
• [gmx-users] trjconv -pbc cluster with rhombic dodecahedron box   chris.neale at utoronto.ca

Last message date: Mon Nov 30 23:38:33 CET 2009
Archived on: Thu Nov 14 12:07:48 CET 2013

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