[gmx-users] Truncation of file traj.trr failed

[ram bio]

Dear Justin,

Thanks for the information regarding the bug, will try the solutions
in the site.

Ram

On Fri, Nov 6, 2009 at 8:42 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:
>
>
> ram bio wrote:
>>
>> Dear Gromacs users,
>>
>> I am running a protein-lipid bilayer simulation for 20ns. I am using
>> Gromacs version 4.0.5 and when i want to continue the mdrun using
>> -append command , I am getting an error as follows:
>>
>> Getting Loaded...
>> Reading file md20.tpr, VERSION 4.0.5 (single precision)
>>
>> Reading checkpoint file state.cpt generated: Fri Nov  6 15:22:25 2009
>>
>>
>> -------------------------------------------------------
>> Program mdrun, VERSION 4.0.5
>> Source code file: checkpoint.c, line: 1248
>>
>> Fatal error:
>> Truncation of file traj.trr failed.
>>
>> Please suugest me how to overcome this error and continue the mdrun.
>>
>
> http://bugzilla.gromacs.org/show_bug.cgi?id=341
>
> I believe this bug has been fixed in the development version (available
> through git).
>
> -Justin
>
>> Thanks,
>>
>> Ram
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>
> --
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
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