[gmx-users] Generate an Index File

[Mark Abraham]

Jack Shultz wrote:
> I am trying to run g_dist
> 
> c:\ProgramData\BOINC\slots\0>g_dist.exe -f md.xtc -s md.tpr
> -------------------------------------------------------
> Program g_dist, VERSION 4.0.5
> Source code file: futil.c, line: 330
> 
> File input/output error:
> index.ndx
> -------------------------------------------------------
> 
> Thanx for Using GROMACS - Have a Nice Day
> so I tried mdrun with the -dn option
> mdrun.exe -dn -v -x -deffnm md
> 
> It failed to generate an index file. What am I doing wrong?

See 
http://www.gromacs.org/index.php?title=Documentation/File_Formats/Index_File

Mark