[gmx-users] segmentation fault in g_anaeig

[Berk Hess]

Hi,

The problem that I fixed last week occured after the use of g_covar -mwa
with a fit selection that is not the first N atoms of the system.

Berk

> Date: Tue, 17 Nov 2009 18:03:37 +0100
> Subject: Re: [gmx-users] segmentation fault in g_anaeig
> From: tsjerkw at gmail.com
> To: gmx-users at gromacs.org
> 
> Hi Nilu,
> 
> Can you paste the exact commands you entered, and indicate the
> selections you made? Oh, and can you check the archives to whether
> this is the same problem that was reported a few weeks ago?
> 
> Cheers,
> 
> Tsjerk
> 
> On Tue, Nov 17, 2009 at 5:53 PM, Nilu Chakrabarti
> <nilu.chakrabarti at gmail.com> wrote:
> > I am used to do PC analysis with g_covar followed by g_anaeig.
> > But recently, I am getting segmentation fault with g_anaeig.
> > The g_covar gives eigenval.xvg, eigenvec.trr and average.pdb.
> >
> > In the next step I use those 3 files to generate -
> > (1) a projection of each individual vectors on the traj using -proj OR
> > (2) a set of pdbs for each vector using -extr -nframes options.
> > In each case I am receiving segmentation fault without any other message
> > anywhere in a file. So i have no way of figuring out where the problem is.
> > I am seeing this problem with gmx v 3.3.3  as well as with v 4.0.5.
> >
> > I will appreciate any help and suggestions. Thanks a bunch.
> >
> > --
> > Nilu
> >
> > --
> > gmx-users mailing list    gmx-users at gromacs.org
> > http://lists.gromacs.org/mailman/listinfo/gmx-users
> > Please search the archive at http://www.gromacs.org/search before posting!
> > Please don't post (un)subscribe requests to the list. Use the
> > www interface or send it to gmx-users-request at gromacs.org.
> > Can't post? Read http://www.gromacs.org/mailing_lists/users.php
> >
> 
> 
> 
> -- 
> Tsjerk A. Wassenaar, Ph.D.
> 
> Computational Chemist
> Medicinal Chemist
> Neuropharmacologist
> -- 
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
 		 	   		  
_________________________________________________________________
New Windows 7: Simplify what you do everyday. Find the right PC for you.
http://windows.microsoft.com/shop
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20091117/8fb7dbea/attachment.html>