[gmx-users] vmd does not display the molecule

Nicolas Sapay nicolas.sapay at cermav.cnrs.fr
Wed Nov 18 14:12:52 CET 2009


Did you try to just add a blank line at the end of the file? (after the 
box definition). Sometimes, that works for me. Otherwise, it could a 
problem of bad end-of-line character. That may happen if you have edited 
the file on Windows and try to visualize it on Linux.


leila karami a écrit :
> Hi
> I am trying to open a gromacs .gro file with VMD but 
> VMD gives the following message upon opening and does not display the 
> molecule : [ error reading box , unexpected  end-of-file reached ]
> I checked number of atoms specified on the second line of the gro file 
> and number of atoms really present in the file. It is ok. I also 
> Checked that the box is correctly described at the last line of my file.
> please guied me
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