[gmx-users] domain decomposition errors

pedro alberto valiente flores valiente at fbio.uh.cu
Thu Nov 26 21:06:55 CET 2009

Hi gromacs users:
I' am trying to run a MD simulation of PlmII+Inhibitor system in cubic
box (59002 atoms) with gromacs 4.0.5 on 8 processors, but my simulation
crashes. In attach are files.tgz which contains the log 
(PlmII+PepstatinA_free.log) and error files (BSA.err.%j). However, I can
run the simulation without problems in 2 processors (PlmII
+PepstatinA_equilibration.log). Can I fix this error setting domain
decomposition parameters of mdrun. I going to appreciate any
MC Pedro Alberto Valiente Flores
Centro de Estudios de Proteínas
Facultad de Biología
Universidad de La Habana
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