[gmx-users] how can i coarse grained the protein atomic structure

[Justin A. Lemkul]

nafiseh farhadian wrote:
> Dear User,
>  
> i simulated the lysozyme protein in atomic level and now i'm going to 
> coarse grained it.
> i'm working with Martini's filester. but i don't know how can i coarse 
> grained my atomic.pdb file to cg.pdb?
> is there anyone who could help me?
>  

Please refer to the MARTINI site.  There are scripts and tutorials there for 
just such a purpose.

-Justin

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================