[gmx-users] Re: gmx-users Digest, Vol 72, Issue 21 (dssp FATAL ERROR)

[Justin A. Lemkul]

vivek modi wrote:

Please take note of this message:

>     When replying, please edit your Subject line so it is more specific
>     than "Re: Contents of gmx-users digest..."
> 

As well, remove all the text that isn't pertinent to your message so archiving 
doesn't get messed up.

<snip>

>     vivek modi wrote:
>      > hi,
>      >
>      > Although this is already discussed in the mailing list but none
>     of the
>      > solutions mentioned helped me.
>      >
>      > I am using Gromacs-4.0.5. I downloaded dssp
>      > from http://swift.cmbi.ru.nl/gv/dssp/HTML/dsspcmbi
>      > Then I copy this to /usr/local/bin & chmod to executable.
>      > But when I run the program do_dssp it gives the following error:
>      >
>      >
>      > Program do_dssp_4, VERSION 4.0.5
>      > Source code file: do_dssp.c, line: 471
>      >
>      > Fatal error:
>      > Failed to execute command: /usr/local/bin/dssp -na ddXnSQTc
>     ddgMjECf >
>      > /dev/null 2> /dev/null
>      >
>      > Any help is appreciated.
>      >
> 
>     Did you re-name the executable?  Have you set the DSSP environment
>     variable
>     properly?
> 
>     -Justin
> 
> 
> 
> Yes. I have done both the things.
> 
> 
> Vivek.
>  

What is the exact do_dssp command you are giving?  It looks like the actual dssp 
executable is being redirected twice somehow.

-Justin

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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