[gmx-users] g_sas => protein and ligand aggregate interface area ?

[Tsjerk Wassenaar]

Hey Lin,

> Is it the same step as calculation of protein A and B interface, which David
> mentioned above?
> But replacing protein B to Ligand aggregate (small micelle of ligand) ?
> g_sas -n ligand-micelle-index.ndx ........ ?

Of course.

> Is my idea correct?

Is it necessary to always question your ability to think in public?
You could try and draw your problem, and you could try to see if
things turn out the way you expect them under the assumption that your
thoughts were correct.

Cheers,

Tsjerk

-- 
Tsjerk A. Wassenaar, Ph.D.

post-doctoral researcher
Molecular Dynamics Group
Groningen Institute for Biomolecular Research and Biotechnology
University of Groningen
The Netherlands