[gmx-users] residue name changes "SOL" to "HOH"
Nilesh Dhumal
ndhumal at andrew.cmu.edu
Sat Aug 28 19:36:35 CEST 2010
Hello,
I have a .pdb file for water modecules.
When I run pdf2gmx command residure name "SOL" change "HOH". I am using
opls force field parameters.
Can you tell whats the problem.
Here is my .pdb dfile
TITLE Protein in water
REMARK THIS IS A SIMULATION BOX
CRYST1 30.273 30.273 30.273 90.00 90.00 90.00 P 1 1
MODEL 1
ATOM 1 OW SOL 1 30.029 25.981 28.726 1.00 0.00
ATOM 2 HW1 SOL 1 30.271 25.107 28.304 1.00 0.00
ATOM 3 HW2 SOL 1 30.216 26.725 28.084 1.00 0.00
ATOM 4 OW SOL 2 14.532 6.560 16.036 1.00 0.00
ATOM 2591 HW1 SOL 864 5.172 6.310 18.849 1.00 0.00
ATOM 2592 HW2 SOL 864 6.771 6.137 19.128 1.00 0.00
TER
ENDMDL
NIlesh
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