[gmx-users] Protein jumping out of water box

[Justin A. Lemkul]

גדעון לפידות wrote:
> Hi all,
> I have been running nano second long simulations using Gromacs 4.0.7 and 
> connecting them to create a long time period. on the last run the 
> protein "jumped" out of the water box (the output files were viewed 
> using VMD) does anyone know why this could have happened? 
> Thanks, Gideon
> 

Please see FAQ #11:

http://www.gromacs.org/Documentation/FAQs

-Justin

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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