[gmx-users] How to force gromacs to fix all bad bonds and angles in a homology model?

[Arthur Roberts]

Hi, all,

I am looking for a way in gromacs or manually to make all the angles,  
etc. ideal.  Perhaps, there is a way to energy minimize a specific  
subset of residues or a single residue.  Your advice would be greatly  
appreciated.

Sincerely,
Art

Dr. Arthur Roberts, Ph.D.
University of California, San Diego
Skaggs School of Pharmacy and Pharmaceutical Sciences
9500 Gilman Drive #0703
La Jolla, CA 92093-0703
email: a1roberts at ucsd.edu
cell: 206-850-7468
office: 858-822-7804
fax: 858-246-0089






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