[gmx-users] -sel option for g_hbond

[Justin A. Lemkul]

Olga Ivchenko wrote:
> Dear Gromacs users,
> 
> Does some one know if -sel option for g_hbond command  is working in 
> gromacs beta 4.5. Because when I try to run fir individual Hbonds 
> privided in second index file gromacs can not recognize -sel command.
> 

I don't think the -sel option has worked for several years (if it ever did). 
The message in 4.5.3 makes this pretty clear:

"KNOWN PROBLEMS
----------
* The option -sel that used to work on selected hbonds is out of order, and
   therefore not available for the time being."

You probably shouldn't be using a beta version; there have been dozens of bug 
fixes that are implemented in the actual release versions.

-Justin

> Yours sincerely,
> Olga
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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