[gmx-users] Segmentation fault in g_hbond

[Erik Marklund]

Erik Marklund skrev 2010-12-18 15.40:
> leila karami skrev 2010-12-18 15.38:
>> Dear Erik
>>
>> thanks for your attention.
>>
>> in version 4.5.1, when I use g_hbond -f .xtc -s .tpr -n .ndx -num -g 
>> -hbn, gromacs give me only hbnum.xvg with segmentation fault.
>> when I use g_hbond -f .xtc -s .tpr -n .ndx -num -g, gromacs give me 
>> only hbnum.xvg without segmentation fault.
> I'd like to see the actual output too, although it may not be ncessary 
> if I can reproduce the error myself.
>>
>> how to file a bugzilla and attach a tpr and xtc/trr? I don't know.
>>
>> size of xtc file is large, how to attach this file to list?
>>
> you could upload it somewhere and post a link to it.
..and here's the bugzilla tracker.
>>
>> -- 
>> Leila Karami
>> Ph.D. student of Physical Chemistry
>> K.N. Toosi University of Technology
>> Theoretical Physical Chemistry Group
>>
>
>


-- 
-----------------------------------------------
Erik Marklund, PhD student
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,    75124 Uppsala, Sweden
phone:    +46 18 471 4537        fax: +46 18 511 755
erikm at xray.bmc.uu.se    http://folding.bmc.uu.se/