[gmx-users] "Atomtype OW not found"

[Justin A. Lemkul]

shikha agarwal wrote:
> I m doning membrane protein simulation , in POPE environment using this 
> tutorial
> 
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/03_solvate.html
> 
> when I run  command:
> grompp -f minim.mdp -c pope.gro -p topol_pope.top -o em.tpr
> 
> I always facing  this error 
> "Atomtype OW not found"
> 
> help me !
> 

Without significantly more information, no one can.  You've badly mangled the 
topology, such that the #include statement for your water topology is either 
missing, mis-formatted, or subject to some conditional that you may or may not 
know you're setting.

If you want advice that's not so vague, please cut and paste the last few lines 
of your topology (.top), including anything you've modified.

-Justin

> with regards:
> shikha agarwal
> IIIT-A
> (bioinformatics)
> 

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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