[gmx-users] "Atomtype OW not found"

[Justin A. Lemkul]

Justin A. Lemkul wrote:
> 
> 
> shikha agarwal wrote:
>> I m doning membrane protein simulation , in POPE environment using 
>> this tutorial
>>
>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/03_solvate.html 
>>
>>
>> when I run  command:
>> grompp -f minim.mdp -c pope.gro -p topol_pope.top -o em.tpr
>>
>> I always facing  this error "Atomtype OW not found"
>>
>> help me !
>>
> 
> Without significantly more information, no one can.  You've badly 
> mangled the topology, such that the #include statement for your water 
> topology is either missing, mis-formatted, or subject to some 
> conditional that you may or may not know you're setting.
> 

...or you've managed to completely break the force field you're using, in which 
case you need to go all the way back to step 1 of the tutorial and follow more 
closely.  The directions are very explicit.

-Justin

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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