[gmx-users] generate .top file

[shikha agarwal]

hello
Merry Christmas.....

this is my topol_pope.top file
; Include chain topologies
#include "forcefield.itp"
#include "pope.itp"

; Include water topology
#include "spc.itp"

; Include ion topologies
#include "ions.itp"

; System specifications
[ system ]
340-Lipid POPE Bilayer

[ molecules ]
; molecule name nr.
POPE 340
SOL 6729


but it should contain protein molecule .what should be topology file ,, how
to generate that for system.gro according to tutorial. my protein has  344
molecules .
 I tried to use g_x2top but it is not available for gromos53a6.

help!
thank for ur support !

with regards :

shikha
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20101225/6a4a2bb7/attachment.html>