[gmx-users] Hydrogen bond tutorial

Erik Marklund erikm at xray.bmc.uu.se
Tue Feb 2 13:12:18 CET 2010

Justin A. Lemkul skrev:
> leila karami wrote:
>> Dear all
>> I want to do Hydrogen bond analysis for my MD data (protein-dna 
>> interaction).
>> If anybody know the tutorial regarding that, please let me know.
>> Any help will highly appreciated!
> Start with the manual and g_hbond -h, and come back with a more 
> focused question.  There isn't going to be detailed tutorials for 
> every single task you can imagine, but certainly with the references 
> provided you should be able to make a reasonable attempt at whatever 
> analysis you're trying to do.  If it doesn't work, then post what 
> you're doing and what you want to be doing to get some advice.
> -Justin
And there are heaps of threads in the list archives that cover many of 
the problems you may run into.


Erik Marklund, PhD student
Laboratory of Molecular Biophysics,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,    75124 Uppsala, Sweden
phone:    +46 18 471 4537        fax: +46 18 511 755
erikm at xray.bmc.uu.se    http://xray.bmc.uu.se/molbiophys

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