[gmx-users] Hydrogen bond tutorial

[Erik Marklund]

Justin A. Lemkul skrev:
>
>
> leila karami wrote:
>> Dear all
>>  
>> I want to do Hydrogen bond analysis for my MD data (protein-dna 
>> interaction).
>> If anybody know the tutorial regarding that, please let me know.
>>
>> Any help will highly appreciated!
>>
>
> Start with the manual and g_hbond -h, and come back with a more 
> focused question.  There isn't going to be detailed tutorials for 
> every single task you can imagine, but certainly with the references 
> provided you should be able to make a reasonable attempt at whatever 
> analysis you're trying to do.  If it doesn't work, then post what 
> you're doing and what you want to be doing to get some advice.
>
> -Justin
And there are heaps of threads in the list archives that cover many of 
the problems you may run into.

Erik

-- 
-----------------------------------------------
Erik Marklund, PhD student
Laboratory of Molecular Biophysics,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,    75124 Uppsala, Sweden
phone:    +46 18 471 4537        fax: +46 18 511 755
erikm at xray.bmc.uu.se    http://xray.bmc.uu.se/molbiophys