[gmx-users] compilation problems orte error

[Justin A. Lemkul]

Jennifer Williams wrote:
> 
> Dear All,
> 
> I am having problems compiling gromacs 4.0.7 in parallel. I am following 
> the
> Quick and Dirty Installation instructions on the gromacs webpage.
> I downloaded the the versions of fftw, OpenMPI and gromacs-4.0.7 
> following these instructions.
> 
> Everything seems to compile OK and I get all the serial executables 
> including mdrun written to my bin directory and they seem to run fine. 
> However when I try to run mdrun_mpi on 6 nodes I get the following:
> 
> [vlxbig16:08666] [NO-NAME] ORTE_ERROR_LOG: Not found in file 
> runtime/orte_init_stage1.c at line 182
> [vlxbig16:08667] [NO-NAME] ORTE_ERROR_LOG: Not found in file 
> runtime/orte_init_stage1.c at line 182
> [vlxbig16:08700] [NO-NAME] ORTE_ERROR_LOG: Not found in file 
> runtime/orte_init_stage1.c at line 182
> [vlxbig16:08670] [NO-NAME] ORTE_ERROR_LOG: Not found in file 
> runtime/orte_init_stage1.c at line 182
> [vlxbig16:08681] [NO-NAME] ORTE_ERROR_LOG: Not found in file 
> runtime/orte_init_stage1.c at line 182
> [vlxbig16:08659] [NO-NAME] ORTE_ERROR_LOG: Not found in file 
> runtime/orte_init_stage1.c at line 182
> --------------------------------------------------------------------------
> It looks like orte_init failed for some reason; your parallel process is
> likely to abort.  There are many reasons that a parallel process can
> fail during orte_init; some of which are due to configuration or
> environment problems.  This failure appears to be an internal failure;
> here's some additional information (which may only be relevant to an
> Open MPI developer):
> 
>   orte_rml_base_select failed
>   --> Returned value -13 instead of ORTE_SUCCESS
> 
> 
> Does anyone have any idea what is causing this? Computer support at my 
> University is not sure.
> 

How are you launching mdrun_mpi (command line)?

-Justin

> 
> Thanks
> 
> 
> 

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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