[gmx-users] are there LJ interactions from periodic images in the z directions with "pbc=xyz" and "ewald_geometry=3dc"?

bohumir bohumir at gmail.com
Mon Jan 11 18:24:43 CET 2010


Dear GROMACS Masters,

when I specify

   pbc=xyz
   ewald_geometry=3dc

then I believe that the PME slab correction is applied according to
Y. In-Chul and M. L. Berkowitz, J. Chem. Phys. 111 (1999) pp. 3155-3162.

But I would think there are still LJ interactions from periodic images
in the "z" direction,
are there?

Thanks,
-Bohumir



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