[gmx-users] hydrogen bond

leila karami karami.leila1 at gmail.com
Tue Jan 12 13:54:03 CET 2010


Hi

I want to obtain following parameters about water molecule and hydrogen
bonds in pr-dna simulation:

1) residence time of number of water mediated hydrogen bonds

2) life time of number of water mediated hydrogen bonds

3) number of water mediated hydrogen bonds

4) number of direct hydrogen bonds

Do g_hbond command is suitable for all of case mentioned above?


Any help will highly appreciated!
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