[gmx-users] distance from solute atom to the edge of the box

Justin A. Lemkul jalemkul at vt.edu
Tue Jan 12 18:10:58 CET 2010

Arden Perkins wrote:
> Also, you can type  "  -h  " in your terminal and it will bring up a 
> list of commands and options for the program and can usually explain 
> what they mean/do. For example: -h pdb2gmx 

Such a command is incorrect.  The -h flag must follow the Gromacs tool, 
otherwise you will undoubtedly receive "-h: command not found."


> Arden Perkins
> On Tue, Jan 12, 2010 at 4:17 AM, leila karami <karami.leila1 at gmail.com 
> <mailto:karami.leila1 at gmail.com>> wrote:
>     Hi
>     How is determined distance from solute atom to the edge of the box
>     in editconf command (what criterion)?
>     Any help will highly appreciated!
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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