[gmx-users] polymer-protein

[P.R.Anand Narayanan]

Dear Gromacs users,

I have to attach a chemical polymer to a protein and when I created peptide bonds and saved it, the entire format of the pdb file changed. That is the entire identity of the protein was lost and the pdb file was saved in the form of ATOMS and not residues.
Are there any solutions to this or can I Use the same in gromacs??????? If yes, how can I use it in the pdb2gmx command????

Please help,
Thanking you,
regards,
Anand


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