[gmx-users] GMXRC Problem

Mark Abraham mark.abraham at anu.edu.au
Mon Jan 25 08:38:24 CET 2010

----- Original Message -----
From: pawan raghav <pwnrghv at gmail.com>
Date: Monday, January 25, 2010 18:21
Subject: [gmx-users] GMXRC Problem
To: gmx-users at gromacs.org

> Dear Justin,
> I have some problem regarding GMXRC execution, I got an error while using gromacs-4.0.7 on windows vista using cygwin i.e. 
> /usr/local/bin/GMXRC: line 35: return: can only  'return' from a function or sourced script.

Thus, it seems you haven't used "source /usr/local/bin/GMXRC". All the installation guides tell you to source it, not to execute it. If you don't know what that means, ask Google.


> /usr/local/bin/GMXRC: line 44:CSH::command not found
> /cygdrive/c/Gromacs/bin/GMXRC.csh:line 8: syntax error near expected token 'setenv'
> /cygdrive/c/Gromacs/bin/GMXRC.csh: line 8: 'if<!$ LD_LIBRARY_PATH> Setenv LD_LIBRARY_PATH "" '
> So please tell how to setenv to execute GMXRC.> 
> -- 
> Pawan Kumar Raghav
> Bioinformatician
> Stem Cell and Gene Therapy Research Group
> Division of Radiation Biosciences
> Timarpur Delhi-110054

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