[gmx-users] cavity point

Sat Jan 30 11:41:12 CET 2010

Hi all,
         I have done the normal mode analysis of pbp5 protein.Now I am
looking  the cavity points in this protein. There are 47 cavity points in
this protein. Now is there any way to find the relationship between cavity
points and the active site of the protein by analyzing the normal modes. Any
idea will be very helpful.
                                                                 Thank you
                                                                    Ram
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