[gmx-users] g_anaeig & pymol
carlajamous at gmail.com
Wed Jul 7 10:37:06 CEST 2010
I did a covariance analysis by following this link:
Now I want to visualize the differences between the extreme structures by
Split the models in the pdb files and delete the originals.
delete ev1 or ev2
Colour the models. This will result in the extreme structures from
eigenvector 1 to be displayed in blue-green and those from eigenvector two
in yellow-red. Then display them in cartoon representation.
But I encountered a problem: When I do dss, pymol sends me this error
"AssignSS-Warning: Ignoring incomplete residue ev3_apo_0002//B/218/.."
for all the residues.
And afterwards, I can't visualize the structures in cartoon representation.
Please does anyone have an idea what is the problem?
PS: the 5 first eigenvectors don't account for > 80% of the total motility,
so could this be my problem?
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