[gmx-users] genbox and water model

[Justin A. Lemkul]

Sai Pooja wrote:
> Hi,
> 
> I am using CHARMM forcefield with the tip3p. What input file(-cs) should 
> i use to solvate the protein using the genbox command? The default is 
> spc216.gro. What would be compatible with my system? 
> 
> I looked up the directory which has spc216.gro file. It has tip4p.gro 
> file but for some reason doesnt have a tip3p.gro file.

http://www.gromacs.org/Documentation/How-tos/TIP3P_coordinate_file

-Justin

> 
> Pooja
> 
> -- 
> Quaerendo Invenietis-Seek and you shall discover.
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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