[gmx-users] Installing gromacs from git

[Mark Abraham]

----- Original Message -----
From: Sai Pooja <saipooja at gmail.com>
Date: Sunday, June 20, 2010 9:35
Subject: Re: [gmx-users] Installing gromacs from git
To: Discussion list for GROMACS users <gmx-users at gromacs.org>

> I am sorry that was a typo in the mail. It was set to lib 

That makes it hard for us to have confidence in the rest of your command lines - copying and pasting the results of "history" is a good way to avoid such problems.

As such I can only suggest looking for "error" in the last 100 lines of config.log and seeing what you find. That, and trying it all again :-)

Mark

> On Sat, Jun 19, 2010 at 7:28 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:
 > 
 > 
>  Sai Pooja wrote:
 >  Hi,
 > 
>  I followed the following steps to install gromacs from the git repository:
 > 
>  1) installed git
>  2) got a clone of gromacs using the anonymous option
 > 
>  3) installed fftw libraries using
>  ./configure --enable-float --prefix=/fs/home/sm868
>  make
>  make install
 > 
>  4)export CPPFLAGS=-I/fs/home/sm868/include
>     export LDFLAGS=-L/fs/home/sm868/include
 > 
>  6)ran ./bootstrap
>  7)ran ./configure --prefix=/fs/home/sm868
>  8)I get the error - checking for sqrt in -lm... yes
>  checking for fftw3.h... yes
>  checking for main in -lfftw3f... no
>  configure: error: Cannot find fftw3f library
 > 
  > 
>  You set your LDFLAGS to the /include subdirectory; you want to set it to the /lib subdirectory.
 > 
>  -Justin
 > 
 >  Can someone help me with this?
 > 
 > 
>  Pooja
 > 
>  -- 
>  Quaerendo Invenietis-Seek and you shall discover.
 > 
  > 
>  -- 
>  ========================================
 > 
>  Justin A. Lemkul
>  Ph.D. Candidate
>  ICTAS Doctoral Scholar
>  MILES-IGERT Trainee
>  Department of Biochemistry
>  Virginia Tech
>  Blacksburg, VA
>  jalemkul[at]vt.edu | (540) 231-9080
 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
 > 
>  ========================================
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